| Chain sequence(s) |
H: QVQLQQSGAGLVKPGASVKLSCKASGYTFTNYWIHWVKQRPGQGLEWIGMIHPNSGGTNDNARFKSKATLTVDESSTTAYMQLSSLTSEDSAVYYCARSSGYNYFDYWGQGTSLTVSS
L: DIVLTQAAFSNPVTLGTSASISCRSSKSLLHSNGITYLYWYLQKPGQSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRISRVEAEDVGVYYCAQNLELPWTFGGGTRLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:15)
[INFO] Main: Simulation completed successfully. (00:01:16)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5036 | |
| 2 | V | H | -1.0904 | |
| 3 | Q | H | -1.7904 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.0517 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.9304 | |
| 8 | G | H | -0.7949 | |
| 9 | A | H | 0.1491 | |
| 11 | G | H | 0.5652 | |
| 12 | L | H | 1.2347 | |
| 13 | V | H | -0.0052 | |
| 14 | K | H | -1.5857 | |
| 15 | P | H | -1.4846 | |
| 16 | G | H | -1.0679 | |
| 17 | A | H | -0.8203 | |
| 18 | S | H | -0.8462 | |
| 19 | V | H | -0.5014 | |
| 20 | K | H | -1.1894 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.6373 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.3734 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.1423 | |
| 27 | G | H | -1.0425 | |
| 28 | Y | H | -0.5531 | |
| 29 | T | H | -0.5503 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -1.4174 | |
| 36 | N | H | -1.4244 | |
| 37 | Y | H | -0.4212 | |
| 38 | W | H | -0.0792 | |
| 39 | I | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.8431 | |
| 45 | R | H | -1.4656 | |
| 46 | P | H | -1.0720 | |
| 47 | G | H | -1.3402 | |
| 48 | Q | H | -1.9182 | |
| 49 | G | H | -1.2224 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.0924 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | M | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | H | H | -0.8133 | |
| 58 | P | H | 0.0000 | |
| 59 | N | H | -2.1033 | |
| 62 | S | H | -1.3848 | |
| 63 | G | H | -1.0782 | |
| 64 | G | H | -0.7733 | |
| 65 | T | H | -0.6681 | |
| 66 | N | H | -1.0880 | |
| 67 | D | H | -1.5078 | |
| 68 | N | H | -1.4997 | |
| 69 | A | H | -1.6939 | |
| 70 | R | H | -2.5158 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.6051 | |
| 74 | S | H | -1.5509 | |
| 75 | K | H | -1.3838 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.8795 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.3718 | |
| 80 | V | H | -0.7346 | |
| 81 | D | H | -1.5706 | |
| 82 | E | H | -2.4463 | |
| 83 | S | H | -1.2618 | |
| 84 | S | H | -1.0234 | |
| 85 | T | H | -1.1555 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.1766 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -0.9827 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.6896 | |
| 93 | S | H | -0.7687 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.2872 | |
| 96 | S | H | -1.4253 | |
| 97 | E | H | -2.0339 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.5933 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.0540 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | S | H | 0.0000 | |
| 108 | S | H | 0.0774 | |
| 109 | G | H | -0.1172 | |
| 110 | Y | H | 0.7626 | |
| 113 | N | H | 0.2735 | |
| 114 | Y | H | 0.2880 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.0054 | |
| 117 | Y | H | 0.0018 | |
| 118 | W | H | -0.4394 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.8498 | |
| 121 | G | H | -0.9296 | |
| 122 | T | H | 0.0000 | |
| 123 | S | H | -0.0374 | |
| 124 | L | H | 0.0000 | |
| 125 | T | H | 0.0458 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.5003 | |
| 128 | S | H | -0.6722 | |
| 1 | D | L | -1.5123 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.6570 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.5839 | |
| 6 | Q | L | -0.4832 | |
| 7 | A | L | 0.3460 | |
| 8 | A | L | 0.6908 | |
| 9 | F | L | 1.1202 | |
| 10 | S | L | -0.2971 | |
| 11 | N | L | -1.4472 | |
| 12 | P | L | -1.3581 | |
| 13 | V | L | 0.0000 | |
| 14 | T | L | -0.8294 | |
| 15 | L | L | 0.0161 | |
| 16 | G | L | -0.7999 | |
| 17 | T | L | -0.6159 | |
| 18 | S | L | -1.1458 | |
| 19 | A | L | 0.0000 | |
| 20 | S | L | -1.2412 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -1.1207 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.2094 | |
| 25 | S | L | 0.0000 | |
| 26 | S | L | -0.9873 | |
| 27 | K | L | -1.5514 | |
| 28 | S | L | -0.8296 | |
| 29 | L | L | 0.0000 | |
| 30 | L | L | 0.3522 | |
| 31 | H | L | -0.6709 | |
| 32 | S | L | -0.9456 | |
| 34 | N | L | -1.3940 | |
| 35 | G | L | -0.7804 | |
| 36 | I | L | -0.0026 | |
| 37 | T | L | 0.0000 | |
| 38 | Y | L | 0.0000 | |
| 39 | L | L | 0.0000 | |
| 40 | Y | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | L | L | 0.0000 | |
| 44 | Q | L | -0.8138 | |
| 45 | K | L | -1.2391 | |
| 46 | P | L | -0.8824 | |
| 47 | G | L | -1.4109 | |
| 48 | Q | L | -2.0083 | |
| 49 | S | L | -1.2516 | |
| 50 | P | L | 0.0000 | |
| 51 | Q | L | -0.8274 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.3218 | |
| 56 | Q | L | 0.0000 | |
| 57 | M | L | 0.1125 | |
| 65 | S | L | -0.2917 | |
| 66 | N | L | -0.3253 | |
| 67 | L | L | -0.0069 | |
| 68 | A | L | 0.0000 | |
| 69 | S | L | -0.3916 | |
| 70 | G | L | -0.5868 | |
| 71 | V | L | -0.5116 | |
| 72 | P | L | -0.9380 | |
| 74 | D | L | -1.9180 | |
| 75 | R | L | 0.0000 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -1.3273 | |
| 78 | S | L | -0.8577 | |
| 79 | S | L | -0.8812 | |
| 80 | G | L | -0.8528 | |
| 83 | S | L | -0.5766 | |
| 84 | G | L | -0.5172 | |
| 85 | T | L | -1.2551 | |
| 86 | D | L | -1.7557 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -1.1722 | |
| 89 | L | L | 0.0000 | |
| 90 | R | L | -2.2687 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.7182 | |
| 93 | R | L | -1.9555 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -1.7205 | |
| 96 | A | L | -1.3277 | |
| 97 | E | L | -1.9834 | |
| 98 | D | L | 0.0000 | |
| 99 | V | L | -0.6719 | |
| 100 | G | L | -0.7711 | |
| 101 | V | L | -0.0233 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | A | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | N | L | 0.0000 | |
| 108 | L | L | -0.0782 | |
| 109 | E | L | -0.9602 | |
| 114 | L | L | -0.1386 | |
| 115 | P | L | -0.4825 | |
| 116 | W | L | 0.0000 | |
| 117 | T | L | -0.0690 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.6808 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | R | L | -0.4349 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.6575 | |
| 126 | I | L | -1.1817 | |
| 127 | K | L | -1.7110 |