Project name: P2F2

Status: done

Started: 2026-06-05 03:01:07
Settings
Chain sequence(s) H: QVQLQQSGAGLVKPGASVKLSCKASGYTFTNYWIHWVKQRPGQGLEWIGMIHPNSGGTNDNARFKSKATLTVDESSTTAYMQLSSLTSEDSAVYYCARSSGYNYFDYWGQGTSLTVSS
L: DIVLTQAAFSNPVTLGTSASISCRSSKSLLHSNGITYLYWYLQKPGQSPQLLIYQMSNLASGVPDRFSSSGSGTDFTLRISRVEAEDVGVYYCAQNLELPWTFGGGTRLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:16)
Show buried residues

Minimal score value
-2.6051
Maximal score value
1.2347
Average score
-0.5741
Total score value
-132.0463

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5036
2 V H -1.0904
3 Q H -1.7904
4 L H 0.0000
5 Q H -2.0517
6 Q H 0.0000
7 S H -0.9304
8 G H -0.7949
9 A H 0.1491
11 G H 0.5652
12 L H 1.2347
13 V H -0.0052
14 K H -1.5857
15 P H -1.4846
16 G H -1.0679
17 A H -0.8203
18 S H -0.8462
19 V H -0.5014
20 K H -1.1894
21 L H 0.0000
22 S H -0.6373
23 C H 0.0000
24 K H -1.3734
25 A H 0.0000
26 S H -1.1423
27 G H -1.0425
28 Y H -0.5531
29 T H -0.5503
30 F H 0.0000
35 T H -1.4174
36 N H -1.4244
37 Y H -0.4212
38 W H -0.0792
39 I H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.8431
45 R H -1.4656
46 P H -1.0720
47 G H -1.3402
48 Q H -1.9182
49 G H -1.2224
50 L H 0.0000
51 E H -1.0924
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 M H 0.0000
56 I H 0.0000
57 H H -0.8133
58 P H 0.0000
59 N H -2.1033
62 S H -1.3848
63 G H -1.0782
64 G H -0.7733
65 T H -0.6681
66 N H -1.0880
67 D H -1.5078
68 N H -1.4997
69 A H -1.6939
70 R H -2.5158
71 F H 0.0000
72 K H -2.6051
74 S H -1.5509
75 K H -1.3838
76 A H 0.0000
77 T H -0.8795
78 L H 0.0000
79 T H -0.3718
80 V H -0.7346
81 D H -1.5706
82 E H -2.4463
83 S H -1.2618
84 S H -1.0234
85 T H -1.1555
86 T H 0.0000
87 A H 0.0000
88 Y H -0.1766
89 M H 0.0000
90 Q H -0.9827
91 L H 0.0000
92 S H -0.6896
93 S H -0.7687
94 L H 0.0000
95 T H -1.2872
96 S H -1.4253
97 E H -2.0339
98 D H 0.0000
99 S H -0.5933
100 A H 0.0000
101 V H 0.0540
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 S H 0.0000
108 S H 0.0774
109 G H -0.1172
110 Y H 0.7626
113 N H 0.2735
114 Y H 0.2880
115 F H 0.0000
116 D H -0.0054
117 Y H 0.0018
118 W H -0.4394
119 G H 0.0000
120 Q H -1.8498
121 G H -0.9296
122 T H 0.0000
123 S H -0.0374
124 L H 0.0000
125 T H 0.0458
126 V H 0.0000
127 S H -0.5003
128 S H -0.6722
1 D L -1.5123
2 I L 0.0000
3 V L 0.6570
4 L L 0.0000
5 T L -0.5839
6 Q L -0.4832
7 A L 0.3460
8 A L 0.6908
9 F L 1.1202
10 S L -0.2971
11 N L -1.4472
12 P L -1.3581
13 V L 0.0000
14 T L -0.8294
15 L L 0.0161
16 G L -0.7999
17 T L -0.6159
18 S L -1.1458
19 A L 0.0000
20 S L -1.2412
21 I L 0.0000
22 S L -1.1207
23 C L 0.0000
24 R L -2.2094
25 S L 0.0000
26 S L -0.9873
27 K L -1.5514
28 S L -0.8296
29 L L 0.0000
30 L L 0.3522
31 H L -0.6709
32 S L -0.9456
34 N L -1.3940
35 G L -0.7804
36 I L -0.0026
37 T L 0.0000
38 Y L 0.0000
39 L L 0.0000
40 Y L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 L L 0.0000
44 Q L -0.8138
45 K L -1.2391
46 P L -0.8824
47 G L -1.4109
48 Q L -2.0083
49 S L -1.2516
50 P L 0.0000
51 Q L -0.8274
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.3218
56 Q L 0.0000
57 M L 0.1125
65 S L -0.2917
66 N L -0.3253
67 L L -0.0069
68 A L 0.0000
69 S L -0.3916
70 G L -0.5868
71 V L -0.5116
72 P L -0.9380
74 D L -1.9180
75 R L 0.0000
76 F L 0.0000
77 S L -1.3273
78 S L -0.8577
79 S L -0.8812
80 G L -0.8528
83 S L -0.5766
84 G L -0.5172
85 T L -1.2551
86 D L -1.7557
87 F L 0.0000
88 T L -1.1722
89 L L 0.0000
90 R L -2.2687
91 I L 0.0000
92 S L -1.7182
93 R L -1.9555
94 V L 0.0000
95 E L -1.7205
96 A L -1.3277
97 E L -1.9834
98 D L 0.0000
99 V L -0.6719
100 G L -0.7711
101 V L -0.0233
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 A L 0.0000
106 Q L 0.0000
107 N L 0.0000
108 L L -0.0782
109 E L -0.9602
114 L L -0.1386
115 P L -0.4825
116 W L 0.0000
117 T L -0.0690
118 F L 0.0000
119 G L 0.0000
120 G L -0.6808
121 G L 0.0000
122 T L 0.0000
123 R L -0.4349
124 L L 0.0000
125 E L -1.6575
126 I L -1.1817
127 K L -1.7110
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Laboratory of Theory of Biopolymers 2018