Project name: query_structure

Status: done

Started: 2025-11-29 10:31:10
Settings
Chain sequence(s) A: GVPCAESCVWIPCTVTALLGCSCKDKVCYLD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:33)
Show buried residues

Minimal score value
-2.8701
Maximal score value
2.5801
Average score
0.4427
Total score value
13.7238

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.3143
2 V A 1.3608
3 P A 0.5590
4 C A 0.9166
5 A A 0.5178
6 E A 0.4002
7 S A 0.0840
8 C A 0.4598
9 V A 1.1744
10 W A 2.2173
11 I A 2.4114
12 P A 1.2898
13 C A 0.0000
14 T A 1.5012
15 V A 2.2979
16 T A 1.8971
17 A A 1.7547
18 L A 2.5801
19 L A 2.4812
20 G A 0.7936
21 C A 0.0000
22 S A -0.3038
23 C A -0.7959
24 K A -2.6040
25 D A -2.8701
26 K A -1.9980
27 V A -0.9185
28 C A 0.0000
29 Y A -0.1481
30 L A 0.4144
31 D A -1.4348
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018