| Chain sequence(s) |
A: GSKGHFF
C: GSKGHFF B: GSKGHFF E: GSKGHFF D: GSKGHFF G: GSKGHFF F: GSKGHFF I: GSKGHFF H: GSKGHFF K: GSKGHFF J: GSKGHFF M: GSKGHFF L: GSKGHFF O: GSKGHFF N: GSKGHFF Q: GSKGHFF P: GSKGHFF S: GSKGHFF R: GSKGHFF T: GSKGHFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:11)
[INFO] Main: Simulation completed successfully. (00:05:21)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.5164 | |
| 2 | S | A | -0.1461 | |
| 3 | K | A | 0.1037 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | 0.0000 | |
| 6 | F | A | 0.0000 | |
| 7 | F | A | -0.0389 | |
| 1 | G | B | -0.8417 | |
| 2 | S | B | 0.0000 | |
| 3 | K | B | -0.5822 | |
| 4 | G | B | -0.3946 | |
| 5 | H | B | 0.0000 | |
| 6 | F | B | 0.0000 | |
| 7 | F | B | 0.1707 | |
| 1 | G | C | -0.4619 | |
| 2 | S | C | 0.0000 | |
| 3 | K | C | 0.0669 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | 0.0000 | |
| 6 | F | C | 0.0000 | |
| 7 | F | C | 0.1196 | |
| 1 | G | D | -0.6064 | |
| 2 | S | D | -0.5492 | |
| 3 | K | D | -0.3504 | |
| 4 | G | D | -0.4198 | |
| 5 | H | D | -0.1916 | |
| 6 | F | D | 0.5654 | |
| 7 | F | D | 1.3439 | |
| 1 | G | E | -0.5099 | |
| 2 | S | E | -0.6837 | |
| 3 | K | E | -1.7465 | |
| 4 | G | E | -1.3412 | |
| 5 | H | E | -0.6978 | |
| 6 | F | E | 1.1666 | |
| 7 | F | E | 1.9718 | |
| 1 | G | F | -0.1743 | |
| 2 | S | F | 0.4115 | |
| 3 | K | F | 0.3233 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -0.4068 | |
| 6 | F | F | -0.5105 | |
| 7 | F | F | -0.1723 | |
| 1 | G | G | -0.4091 | |
| 2 | S | G | -0.1959 | |
| 3 | K | G | -0.3141 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | -0.3479 | |
| 6 | F | G | 0.0000 | |
| 7 | F | G | 0.9849 | |
| 1 | G | H | -0.1646 | |
| 2 | S | H | 0.2243 | |
| 3 | K | H | 0.2389 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | -0.5649 | |
| 6 | F | H | 0.0000 | |
| 7 | F | H | -0.0753 | |
| 1 | G | I | -0.7232 | |
| 2 | S | I | -0.8911 | |
| 3 | K | I | -1.5953 | |
| 4 | G | I | -1.0507 | |
| 5 | H | I | -0.6954 | |
| 6 | F | I | 0.0000 | |
| 7 | F | I | 1.6156 | |
| 1 | G | J | -0.3611 | |
| 2 | S | J | -0.2006 | |
| 3 | K | J | -0.2500 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | -0.1795 | |
| 6 | F | J | 0.0000 | |
| 7 | F | J | 0.8400 | |
| 1 | G | K | -0.1862 | |
| 2 | S | K | 0.4858 | |
| 3 | K | K | 0.4401 | |
| 4 | G | K | 0.0000 | |
| 5 | H | K | -0.3087 | |
| 6 | F | K | -0.2564 | |
| 7 | F | K | -0.1505 | |
| 1 | G | L | -0.8026 | |
| 2 | S | L | -1.1304 | |
| 3 | K | L | -1.6035 | |
| 4 | G | L | -0.8823 | |
| 5 | H | L | -0.3713 | |
| 6 | F | L | 0.9513 | |
| 7 | F | L | 1.7441 | |
| 1 | G | M | -0.8759 | |
| 2 | S | M | -0.8511 | |
| 3 | K | M | -1.0628 | |
| 4 | G | M | 0.1818 | |
| 5 | H | M | 1.0460 | |
| 6 | F | M | 2.3782 | |
| 7 | F | M | 1.9595 | |
| 1 | G | N | -0.4538 | |
| 2 | S | N | 0.2190 | |
| 3 | K | N | 0.9830 | |
| 4 | G | N | 0.0000 | |
| 5 | H | N | 0.0000 | |
| 6 | F | N | 1.3264 | |
| 7 | F | N | 0.0546 | |
| 1 | G | O | -0.6875 | |
| 2 | S | O | -0.4201 | |
| 3 | K | O | -0.0217 | |
| 4 | G | O | 0.0000 | |
| 5 | H | O | 0.0000 | |
| 6 | F | O | 1.4478 | |
| 7 | F | O | 0.4046 | |
| 1 | G | P | -0.7257 | |
| 2 | S | P | -0.3728 | |
| 3 | K | P | -0.0364 | |
| 4 | G | P | 0.0000 | |
| 5 | H | P | 0.0000 | |
| 6 | F | P | 0.9902 | |
| 7 | F | P | 0.0789 | |
| 1 | G | Q | -0.5381 | |
| 2 | S | Q | -0.1371 | |
| 3 | K | Q | 0.0109 | |
| 4 | G | Q | 0.0000 | |
| 5 | H | Q | 0.5493 | |
| 6 | F | Q | 1.0904 | |
| 7 | F | Q | 0.5828 | |
| 1 | G | R | -0.3412 | |
| 2 | S | R | 0.1904 | |
| 3 | K | R | 0.4355 | |
| 4 | G | R | 0.0000 | |
| 5 | H | R | 0.3964 | |
| 6 | F | R | 1.0449 | |
| 7 | F | R | 0.7798 | |
| 1 | G | S | -0.7532 | |
| 2 | S | S | -0.5487 | |
| 3 | K | S | -0.3245 | |
| 4 | G | S | 0.0000 | |
| 5 | H | S | 0.5824 | |
| 6 | F | S | 0.9592 | |
| 7 | F | S | 0.2731 | |
| 1 | G | T | -0.7084 | |
| 2 | S | T | -0.6870 | |
| 3 | K | T | -1.2520 | |
| 4 | G | T | -0.4594 | |
| 5 | H | T | 0.0443 | |
| 6 | F | T | 1.7828 | |
| 7 | F | T | 2.0793 |