Project name: 9bc9e83722d572f

Status: done

Started: 2026-02-11 06:36:21
Settings
Chain sequence(s) A: GSKGHFF
C: GSKGHFF
B: GSKGHFF
E: GSKGHFF
D: GSKGHFF
G: GSKGHFF
F: GSKGHFF
I: GSKGHFF
H: GSKGHFF
K: GSKGHFF
J: GSKGHFF
M: GSKGHFF
L: GSKGHFF
O: GSKGHFF
N: GSKGHFF
Q: GSKGHFF
P: GSKGHFF
S: GSKGHFF
R: GSKGHFF
T: GSKGHFF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:21)
Show buried residues

Minimal score value
-1.7465
Maximal score value
2.3782
Average score
-0.0048
Total score value
-0.6703

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.5164
2 S A -0.1461
3 K A 0.1037
4 G A 0.0000
5 H A 0.0000
6 F A 0.0000
7 F A -0.0389
1 G B -0.8417
2 S B 0.0000
3 K B -0.5822
4 G B -0.3946
5 H B 0.0000
6 F B 0.0000
7 F B 0.1707
1 G C -0.4619
2 S C 0.0000
3 K C 0.0669
4 G C 0.0000
5 H C 0.0000
6 F C 0.0000
7 F C 0.1196
1 G D -0.6064
2 S D -0.5492
3 K D -0.3504
4 G D -0.4198
5 H D -0.1916
6 F D 0.5654
7 F D 1.3439
1 G E -0.5099
2 S E -0.6837
3 K E -1.7465
4 G E -1.3412
5 H E -0.6978
6 F E 1.1666
7 F E 1.9718
1 G F -0.1743
2 S F 0.4115
3 K F 0.3233
4 G F 0.0000
5 H F -0.4068
6 F F -0.5105
7 F F -0.1723
1 G G -0.4091
2 S G -0.1959
3 K G -0.3141
4 G G 0.0000
5 H G -0.3479
6 F G 0.0000
7 F G 0.9849
1 G H -0.1646
2 S H 0.2243
3 K H 0.2389
4 G H 0.0000
5 H H -0.5649
6 F H 0.0000
7 F H -0.0753
1 G I -0.7232
2 S I -0.8911
3 K I -1.5953
4 G I -1.0507
5 H I -0.6954
6 F I 0.0000
7 F I 1.6156
1 G J -0.3611
2 S J -0.2006
3 K J -0.2500
4 G J 0.0000
5 H J -0.1795
6 F J 0.0000
7 F J 0.8400
1 G K -0.1862
2 S K 0.4858
3 K K 0.4401
4 G K 0.0000
5 H K -0.3087
6 F K -0.2564
7 F K -0.1505
1 G L -0.8026
2 S L -1.1304
3 K L -1.6035
4 G L -0.8823
5 H L -0.3713
6 F L 0.9513
7 F L 1.7441
1 G M -0.8759
2 S M -0.8511
3 K M -1.0628
4 G M 0.1818
5 H M 1.0460
6 F M 2.3782
7 F M 1.9595
1 G N -0.4538
2 S N 0.2190
3 K N 0.9830
4 G N 0.0000
5 H N 0.0000
6 F N 1.3264
7 F N 0.0546
1 G O -0.6875
2 S O -0.4201
3 K O -0.0217
4 G O 0.0000
5 H O 0.0000
6 F O 1.4478
7 F O 0.4046
1 G P -0.7257
2 S P -0.3728
3 K P -0.0364
4 G P 0.0000
5 H P 0.0000
6 F P 0.9902
7 F P 0.0789
1 G Q -0.5381
2 S Q -0.1371
3 K Q 0.0109
4 G Q 0.0000
5 H Q 0.5493
6 F Q 1.0904
7 F Q 0.5828
1 G R -0.3412
2 S R 0.1904
3 K R 0.4355
4 G R 0.0000
5 H R 0.3964
6 F R 1.0449
7 F R 0.7798
1 G S -0.7532
2 S S -0.5487
3 K S -0.3245
4 G S 0.0000
5 H S 0.5824
6 F S 0.9592
7 F S 0.2731
1 G T -0.7084
2 S T -0.6870
3 K T -1.2520
4 G T -0.4594
5 H T 0.0443
6 F T 1.7828
7 F T 2.0793
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Laboratory of Theory of Biopolymers 2018