Project name: CLD_polimerization_test_1

Status: done

Started: 2025-07-21 09:59:26
Settings
Chain sequence(s) A: KIERGTILTQPGVFGVFTMFKLRPDWNKVPAAERKGAAEEVKKLIEKHKDNVLVDLYLTRGLETNSDFFFRIHAYDLAKAQTFMREFRSTTIGKHADVTETLVGVTKPLNYITKDKSPGLNAALSSATYSGPAPRYVIVIPVKKNAEWWNMSPEERLKEMEEHTTPTLAYLVNVKRKLYHSTGLDDTDFITYFETNDLTAFNNLMLSLAQTTLGTIHSPEDVIKALAD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:10)
Show buried residues

Minimal score value
-4.1878
Maximal score value
0.819
Average score
-1.0642
Total score value
-242.6274

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
8 K A -2.9229
9 I A -2.3688
10 E A -3.1991
11 R A -2.3550
12 G A -1.6927
13 T A -1.2928
14 I A 0.0000
15 L A -0.6058
16 T A -0.7450
17 Q A -0.9045
18 P A -0.9683
19 G A -0.8134
20 V A 0.0000
21 F A -0.0229
22 G A 0.0000
23 V A 0.0000
24 F A 0.0000
25 T A 0.0000
26 M A -0.5954
27 F A 0.0000
28 K A -2.1127
29 L A -2.0020
30 R A -2.5948
31 P A -1.9763
32 D A -2.5145
33 W A 0.0000
34 N A -2.8781
35 K A -2.8286
36 V A -2.0337
37 P A -1.6256
38 A A -1.8194
39 A A -1.5479
40 E A -2.5872
41 R A -2.8454
42 K A -3.4417
43 G A -2.5975
44 A A 0.0000
45 A A 0.0000
46 E A -3.1067
47 E A -2.6088
48 V A 0.0000
49 K A -3.0553
50 K A -3.8336
51 L A 0.0000
52 I A -2.8259
53 E A -3.9682
54 K A -3.7955
55 H A -3.2876
56 K A -4.1878
57 D A -3.8666
58 N A -2.5588
59 V A 0.0000
60 L A -1.3218
61 V A 0.0000
62 D A 0.0000
63 L A 0.0000
64 Y A 0.0000
65 L A -0.5605
66 T A 0.0000
67 R A -2.1945
68 G A -1.1564
69 L A -0.4333
70 E A -1.2390
71 T A -1.3109
72 N A -1.8807
73 S A 0.0000
74 D A 0.0000
75 F A 0.0000
76 F A 0.0000
77 F A 0.0000
78 R A 0.0000
79 I A 0.0000
80 H A 0.0000
81 A A 0.0000
82 Y A 0.3321
83 D A -1.2066
84 L A -0.5127
85 A A -0.8758
86 K A -1.8164
87 A A 0.0000
88 Q A -1.6368
89 T A -1.5789
90 F A 0.0000
91 M A 0.0000
92 R A -3.0590
93 E A -2.3714
94 F A 0.0000
95 R A -3.0445
96 S A -2.1506
97 T A 0.0000
98 T A -1.5622
99 I A 0.0000
100 G A 0.0000
101 K A -2.5775
102 H A -2.4269
103 A A 0.0000
104 D A -2.0238
105 V A -0.8202
106 T A -0.9944
107 E A -1.1903
108 T A -0.4122
109 L A 0.0000
110 V A 0.0129
111 G A 0.0000
112 V A 0.0000
113 T A 0.0000
114 K A -1.8096
115 P A -0.9315
116 L A -0.2129
117 N A -1.1650
118 Y A -1.7314
119 I A 0.0000
120 T A -1.9431
121 K A -2.9649
122 D A -3.3582
123 K A -3.2536
124 S A 0.0000
125 P A -1.8399
126 G A -1.1396
127 L A -0.5997
128 N A -1.0922
129 A A -0.5027
130 A A 0.0046
131 L A 0.2616
132 S A -0.0732
133 S A -0.0148
134 A A 0.2927
135 T A 0.2104
136 Y A 0.1071
137 S A -0.2581
138 G A -0.6052
139 P A -0.9313
140 A A -0.6270
141 P A -1.3697
142 R A -1.8815
143 Y A -0.6327
144 V A 0.0000
145 I A 0.0000
146 V A 0.0000
147 I A 0.3699
148 P A -0.1498
149 V A -0.6000
150 K A -2.1647
151 K A -1.8743
152 N A -2.3918
153 A A -1.6312
154 E A -2.4526
155 W A 0.0000
156 W A -0.8850
157 N A -1.8432
158 M A -1.3828
159 S A -1.4618
160 P A -2.0642
161 E A -3.2282
162 E A -3.2517
163 R A -2.6866
164 L A -3.0741
165 K A -4.1672
166 E A -3.9505
167 M A -2.7074
168 E A -2.9011
169 E A -3.2697
170 H A -2.0195
171 T A 0.0000
172 T A -0.8180
173 P A -0.4444
174 T A 0.0000
175 L A 0.4432
176 A A 0.4021
177 Y A 0.1587
178 L A 0.2962
179 V A 0.5643
180 N A -0.4676
181 V A 0.0000
182 K A -1.1596
183 R A -1.0160
184 K A -0.5258
185 L A 0.2321
186 Y A 0.0000
187 H A -0.1940
188 S A 0.0000
189 T A -0.7927
190 G A -0.5833
191 L A -0.0134
192 D A -1.1318
193 D A -2.1686
194 T A -1.4901
195 D A 0.0000
196 F A -0.1694
197 I A 0.0000
198 T A 0.2699
199 Y A 0.0000
200 F A 0.0000
201 E A -1.0631
202 T A 0.0000
203 N A -1.3792
204 D A -1.2172
205 L A -0.7521
206 T A -0.8823
207 A A -0.6899
208 F A 0.0000
209 N A -1.2113
210 N A -0.8331
211 L A 0.0000
212 M A 0.2813
213 L A 0.8190
214 S A 0.1690
215 L A 0.1757
216 A A 0.2805
217 Q A -0.5220
231 T A 0.1366
232 T A 0.0000
233 L A 0.3210
234 G A 0.0000
235 T A -0.4185
236 I A -0.5879
237 H A -1.3594
238 S A -1.2368
239 P A -1.5012
240 E A -2.7973
241 D A -2.8016
242 V A 0.0000
243 I A 0.0000
244 K A -3.2796
245 A A -2.2023
246 L A 0.0000
247 A A 0.0000
248 D A -2.6195
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Laboratory of Theory of Biopolymers 2018