| Chain sequence(s) |
A: GGGHKFG
C: GGGHKFG B: GGGHKFG E: GGGHKFG D: GGGHKFG G: GGGHKFG F: GGGHKFG I: GGGHKFG H: GGGHKFG K: GGGHKFG J: GGGHKFG L: GGGHKFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:46)
[INFO] Main: Simulation completed successfully. (00:02:49)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.0672 | |
| 2 | G | A | -1.6692 | |
| 3 | G | A | -1.8570 | |
| 4 | H | A | -2.1617 | |
| 5 | K | A | -2.6098 | |
| 6 | F | A | -0.9670 | |
| 7 | G | A | -0.9387 | |
| 1 | G | B | -1.1003 | |
| 2 | G | B | -1.7671 | |
| 3 | G | B | -2.0561 | |
| 4 | H | B | -2.2447 | |
| 5 | K | B | -2.3868 | |
| 6 | F | B | -0.3290 | |
| 7 | G | B | -0.5963 | |
| 1 | G | C | -1.3568 | |
| 2 | G | C | -1.6081 | |
| 3 | G | C | -2.0319 | |
| 4 | H | C | -1.9538 | |
| 5 | K | C | -2.4424 | |
| 6 | F | C | 0.0000 | |
| 7 | G | C | -1.1688 | |
| 1 | G | D | -1.3243 | |
| 2 | G | D | -1.4113 | |
| 3 | G | D | -1.6696 | |
| 4 | H | D | -1.6413 | |
| 5 | K | D | -2.5271 | |
| 6 | F | D | 0.0000 | |
| 7 | G | D | -1.4678 | |
| 1 | G | E | -1.2874 | |
| 2 | G | E | -1.4326 | |
| 3 | G | E | -1.5679 | |
| 4 | H | E | -1.6417 | |
| 5 | K | E | -2.4956 | |
| 6 | F | E | 0.0000 | |
| 7 | G | E | -1.4999 | |
| 1 | G | F | -1.3390 | |
| 2 | G | F | -1.5282 | |
| 3 | G | F | -1.8557 | |
| 4 | H | F | -1.9482 | |
| 5 | K | F | -2.7757 | |
| 6 | F | F | 0.0000 | |
| 7 | G | F | -1.5079 | |
| 1 | G | G | -1.1965 | |
| 2 | G | G | -1.4280 | |
| 3 | G | G | -1.8815 | |
| 4 | H | G | -1.7909 | |
| 5 | K | G | -2.6661 | |
| 6 | F | G | -1.2994 | |
| 7 | G | G | -1.1628 | |
| 1 | G | H | -1.1830 | |
| 2 | G | H | -1.5054 | |
| 3 | G | H | -2.0691 | |
| 4 | H | H | -2.1779 | |
| 5 | K | H | -2.6211 | |
| 6 | F | H | -0.9095 | |
| 7 | G | H | -0.8953 | |
| 1 | G | I | -1.3179 | |
| 2 | G | I | -1.5601 | |
| 3 | G | I | -1.9527 | |
| 4 | H | I | -2.0320 | |
| 5 | K | I | -2.6884 | |
| 6 | F | I | 0.0000 | |
| 7 | G | I | -1.3659 | |
| 1 | G | J | -1.2715 | |
| 2 | G | J | -1.4309 | |
| 3 | G | J | -1.5796 | |
| 4 | H | J | -1.7350 | |
| 5 | K | J | -2.6317 | |
| 6 | F | J | 0.0000 | |
| 7 | G | J | -1.5101 | |
| 1 | G | K | -1.3066 | |
| 2 | G | K | -1.3870 | |
| 3 | G | K | -1.6367 | |
| 4 | H | K | -1.6619 | |
| 5 | K | K | -2.5673 | |
| 6 | F | K | 0.0000 | |
| 7 | G | K | -1.5026 | |
| 1 | G | L | -1.3231 | |
| 2 | G | L | -1.5370 | |
| 3 | G | L | -1.9179 | |
| 4 | H | L | -1.9576 | |
| 5 | K | L | -2.6141 | |
| 6 | F | L | 0.0000 | |
| 7 | G | L | -1.3692 |