| Chain sequence(s) |
A: FFGHKGG
C: FFGHKGG B: FFGHKGG E: FFGHKGG D: FFGHKGG G: FFGHKGG F: FFGHKGG I: FFGHKGG H: FFGHKGG K: FFGHKGG J: FFGHKGG L: FFGHKGG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:06)
[INFO] Main: Simulation completed successfully. (00:03:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 0.0000 | |
| 2 | F | A | 2.2253 | |
| 3 | G | A | 0.4379 | |
| 4 | H | A | 0.0000 | |
| 5 | K | A | -2.9452 | |
| 6 | G | A | -2.2214 | |
| 7 | G | A | -1.3427 | |
| 1 | F | B | 2.4688 | |
| 2 | F | B | 2.8599 | |
| 3 | G | B | 0.5260 | |
| 4 | H | B | -0.7919 | |
| 5 | K | B | -2.7597 | |
| 6 | G | B | -1.9753 | |
| 7 | G | B | -1.4355 | |
| 1 | F | C | 0.9948 | |
| 2 | F | C | 2.2255 | |
| 3 | G | C | 0.4162 | |
| 4 | H | C | -0.6626 | |
| 5 | K | C | -2.2767 | |
| 6 | G | C | -0.8172 | |
| 7 | G | C | -0.0191 | |
| 1 | F | D | 0.0000 | |
| 2 | F | D | 2.3467 | |
| 3 | G | D | 0.4962 | |
| 4 | H | D | 0.0000 | |
| 5 | K | D | -2.6661 | |
| 6 | G | D | -1.6590 | |
| 7 | G | D | -0.9750 | |
| 1 | F | E | 0.0000 | |
| 2 | F | E | 1.9443 | |
| 3 | G | E | 0.4139 | |
| 4 | H | E | 0.0000 | |
| 5 | K | E | -2.3494 | |
| 6 | G | E | -1.8480 | |
| 7 | G | E | -1.2296 | |
| 1 | F | F | 0.0000 | |
| 2 | F | F | 2.4328 | |
| 3 | G | F | 0.5599 | |
| 4 | H | F | 0.0000 | |
| 5 | K | F | -2.6464 | |
| 6 | G | F | 0.0000 | |
| 7 | G | F | -1.2329 | |
| 1 | F | G | 2.3103 | |
| 2 | F | G | 2.8226 | |
| 3 | G | G | 0.4305 | |
| 4 | H | G | -0.5194 | |
| 5 | K | G | -2.4040 | |
| 6 | G | G | -1.6489 | |
| 7 | G | G | -0.4409 | |
| 1 | F | H | 2.6492 | |
| 2 | F | H | 2.8767 | |
| 3 | G | H | 0.5940 | |
| 4 | H | H | -0.3583 | |
| 5 | K | H | -2.3179 | |
| 6 | G | H | -1.7410 | |
| 7 | G | H | -0.9594 | |
| 1 | F | I | 0.0000 | |
| 2 | F | I | 2.4604 | |
| 3 | G | I | 0.6851 | |
| 4 | H | I | 0.0000 | |
| 5 | K | I | -2.2892 | |
| 6 | G | I | -1.7765 | |
| 7 | G | I | -1.1676 | |
| 1 | F | J | 0.0000 | |
| 2 | F | J | 1.8894 | |
| 3 | G | J | 0.4044 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -2.3865 | |
| 6 | G | J | 0.0000 | |
| 7 | G | J | -1.1973 | |
| 1 | F | K | 0.0000 | |
| 2 | F | K | 1.7587 | |
| 3 | G | K | 0.3971 | |
| 4 | H | K | 0.0000 | |
| 5 | K | K | -2.5458 | |
| 6 | G | K | -2.0778 | |
| 7 | G | K | -1.4427 | |
| 1 | F | L | 0.0000 | |
| 2 | F | L | 1.7834 | |
| 3 | G | L | 0.1797 | |
| 4 | H | L | 0.0000 | |
| 5 | K | L | -2.6273 | |
| 6 | G | L | -2.1265 | |
| 7 | G | L | -1.3663 |