| Chain sequence(s) |
A: QVQLVESGGGLVQPGGSLRLSCAASGKMSSRRCMAWFRQAPGKERERVAKLLTTSGSTYLADSVKGRFTISRDNSKNTVYLQMNSLRAEDTAVYYCAADSFEDPTCTLVTSSGAFQYWGQGTLVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:35)
[INFO] Main: Simulation completed successfully. (00:01:36)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -2.0085 | |
| 2 | V | A | 0.0000 | |
| 3 | Q | A | -1.4907 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.0696 | |
| 6 | E | A | 0.4127 | |
| 7 | S | A | -0.2744 | |
| 8 | G | A | -0.7990 | |
| 9 | G | A | 0.0886 | |
| 10 | G | A | 0.6312 | |
| 11 | L | A | 1.3285 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.4993 | |
| 14 | P | A | -1.8891 | |
| 15 | G | A | -1.6673 | |
| 16 | G | A | -1.1977 | |
| 17 | S | A | -1.6196 | |
| 18 | L | A | -1.2461 | |
| 19 | R | A | -2.3456 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.6135 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.2011 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -1.3678 | |
| 26 | G | A | -2.0294 | |
| 27 | K | A | -2.3628 | |
| 28 | M | A | -1.4840 | |
| 29 | S | A | -1.1849 | |
| 30 | S | A | -1.2259 | |
| 31 | R | A | -1.8846 | |
| 32 | R | A | -1.1309 | |
| 33 | C | A | 0.0000 | |
| 34 | M | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.7314 | |
| 40 | A | A | -1.6435 | |
| 41 | P | A | -1.5371 | |
| 42 | G | A | -1.9165 | |
| 43 | K | A | -3.3070 | |
| 44 | E | A | -3.4821 | |
| 45 | R | A | -2.7612 | |
| 46 | E | A | -2.6007 | |
| 47 | R | A | -1.2220 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | K | A | 0.0000 | |
| 51 | L | A | 0.0000 | |
| 52 | L | A | 0.0000 | |
| 53 | T | A | -1.1345 | |
| 54 | T | A | -0.6976 | |
| 55 | S | A | -0.5019 | |
| 56 | G | A | -0.5027 | |
| 57 | S | A | 0.0106 | |
| 58 | T | A | 0.5054 | |
| 59 | Y | A | 0.8460 | |
| 60 | L | A | -0.2177 | |
| 61 | A | A | -1.1902 | |
| 62 | D | A | -2.2857 | |
| 63 | S | A | -1.5494 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.4348 | |
| 66 | G | A | -1.8497 | |
| 67 | R | A | -1.6436 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8899 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -1.1279 | |
| 72 | R | A | -2.3686 | |
| 73 | D | A | -2.5210 | |
| 74 | N | A | -2.7102 | |
| 75 | S | A | -2.1155 | |
| 76 | K | A | -2.7991 | |
| 77 | N | A | -2.2188 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -1.0675 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.7519 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -2.1505 | |
| 85 | S | A | -1.6399 | |
| 86 | L | A | 0.0000 | |
| 87 | R | A | -2.9029 | |
| 88 | A | A | -1.9972 | |
| 89 | E | A | -2.4283 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.4932 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | 0.7787 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | 0.0399 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | D | A | 0.0000 | |
| 100 | S | A | -0.8897 | |
| 101 | F | A | -0.9424 | |
| 102 | E | A | -2.1847 | |
| 103 | D | A | -1.2459 | |
| 104 | P | A | -1.1487 | |
| 105 | T | A | -0.3802 | |
| 106 | C | A | 0.0000 | |
| 107 | T | A | 0.2706 | |
| 108 | L | A | 0.8799 | |
| 109 | V | A | 0.0000 | |
| 110 | T | A | -0.0565 | |
| 111 | S | A | -0.6429 | |
| 112 | S | A | -1.1377 | |
| 113 | G | A | -0.7686 | |
| 114 | A | A | -0.4088 | |
| 115 | F | A | 0.0000 | |
| 116 | Q | A | -1.1069 | |
| 117 | Y | A | -0.5706 | |
| 118 | W | A | -0.1096 | |
| 119 | G | A | -0.1718 | |
| 120 | Q | A | -0.9126 | |
| 121 | G | A | 0.0688 | |
| 122 | T | A | 0.6003 | |
| 123 | L | A | 1.7426 | |
| 124 | V | A | 0.0000 | |
| 125 | T | A | 0.2689 | |
| 126 | V | A | 0.0000 | |
| 127 | S | A | -0.8709 | |
| 128 | S | A | -0.5293 |