Project name: PodJ4

Status: done

Started: 2026-03-25 13:25:55
Settings
Chain sequence(s) A: MLGAVETANPATGVQEGLDSLAATLTQKMEAARLEMAAKLRESADGRFDRMERKLGEMAAHVQAAEQRSAQAIERMGREIVGVADAFNRRVHAAESRNASAIEQVGGEVARIAASVEHKLNRADSVQAQALEKLGGEIARITEKLAERIGSAERRNALAIDDVGEQVARVTERLNQRHERSA
C: MLGAVETANPATGVQEGLDSLAATLTQKMEAARLEMAAKLRESADGRFDRMERKLGEMAAHVQAAEQRSAQAIERMGREIVGVADAFNRRVHAAESRNASAIEQVGGEVARIAASVEHKLNRADSVQAQALEKLGGEIARITEKLAERIGSAERRNALAIDDVGEQVARVTERLNQRHERSA
B: MLGAVETANPATGVQEGLDSLAATLTQKMEAARLEMAAKLRESADGRFDRMERKLGEMAAHVQAAEQRSAQAIERMGREIVGVADAFNRRVHAAESRNASAIEQVGGEVARIAASVEHKLNRADSVQAQALEKLGGEIARITEKLAERIGSAERRNALAIDDVGEQVARVTERLNQRHERSA
D: MLGAVETANPATGVQEGLDSLAATLTQKMEAARLEMAAKLRESADGRFDRMERKLGEMAAHVQAAEQRSAQAIERMGREIVGVADAFNRRVHAAESRNASAIEQVGGEVARIAASVEHKLNRADSVQAQALEKLGGEIARITEKLAERIGSAERRNALAIDDVGEQVARVTERLNQRHERSA
input PDB
Selected Chain(s) A,B,C,D
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:23:48)
[INFO]       Main:     Simulation completed successfully.                                          (00:23:58)
Show buried residues

Minimal score value
-2.2374
Maximal score value
1.6525
Average score
-0.5735
Total score value
-417.4742

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.3294
2 L A 1.6508
3 G A -0.1744
4 A A 0.2958
5 V A 1.4462
6 E A -1.5043
7 T A -0.3916
8 A A -0.1879
9 N A -1.3073
10 P A -0.4695
11 A A 0.0025
12 T A -0.1341
13 G A -0.4256
14 V A 0.0203
15 Q A -1.0291
16 E A -1.9604
17 G A -0.3717
18 L A 0.0000
19 D A -1.8191
20 S A -0.4863
21 L A 0.0000
22 A A 0.0164
23 A A 0.0525
24 T A -0.0287
25 L A 0.0000
26 T A -0.2273
27 Q A -1.3506
28 K A -1.0553
29 M A 0.0000
30 E A -0.4645
31 A A -0.0414
32 A A 0.0133
33 R A 0.0000
34 L A 0.9723
35 E A -1.3552
36 M A 0.0000
37 A A 0.0000
38 A A -0.1375
39 K A -0.9476
40 L A 0.0000
41 R A -0.9731
42 E A -1.9415
43 S A -0.3564
44 A A -0.0855
45 D A -0.5609
46 G A -0.4232
47 R A -0.6293
48 F A 0.0000
49 D A -2.1170
50 R A -2.1620
51 M A 0.0000
52 E A -0.5078
53 R A -2.0076
54 K A -1.0667
55 L A 0.0000
56 G A -0.5677
57 E A -1.8632
58 M A 0.0000
59 A A 0.0220
60 A A 0.0244
61 H A -0.1687
62 V A 0.0000
63 Q A -0.8863
64 A A -0.1368
65 A A -0.0424
66 E A -0.4971
67 Q A -1.4613
68 R A -1.6946
69 S A -0.3078
70 A A -0.1680
71 Q A -1.0349
72 A A -0.1797
73 I A 0.0000
74 E A -2.1107
75 R A -2.1615
76 M A 0.0000
77 G A -0.4373
78 R A -2.1074
79 E A -1.7244
80 I A 0.0000
81 V A 1.1601
82 G A -0.2014
83 V A 0.1963
84 A A -0.1078
85 D A -1.5951
86 A A -0.2560
87 F A 0.0000
88 N A -0.7914
89 R A -1.9949
90 R A -0.8693
91 V A 0.0000
92 H A -0.9824
93 A A -0.1364
94 A A -0.0245
95 E A -0.2496
96 S A -0.4554
97 R A -1.3466
98 N A 0.0000
99 A A -0.0090
100 S A -0.1974
101 A A -0.0269
102 I A 0.0000
103 E A -2.0456
104 Q A -1.5272
105 V A 0.0000
106 G A -0.3396
107 G A -0.4408
108 E A -0.4344
109 V A 0.0000
110 A A -0.3009
111 R A -1.8017
112 I A -0.1311
113 A A 0.0000
114 A A 0.0222
115 S A -0.0420
116 V A 0.0000
117 E A -0.8999
118 H A -1.1988
119 K A -0.7889
120 L A 0.0000
121 N A -1.5900
122 R A -2.0394
123 A A -0.3540
124 D A -0.2551
125 S A -0.0988
126 V A 0.6106
127 Q A 0.0000
128 A A -0.1741
129 Q A -1.0472
130 A A -0.1787
131 L A 0.0000
132 E A -2.1247
133 K A -2.0263
134 L A 0.0000
135 G A -0.0787
136 G A -0.4247
137 E A -1.8351
138 I A 0.0000
139 A A -0.3122
140 R A -1.8020
141 I A -0.1148
142 T A 0.0000
143 E A -2.0455
144 K A -1.5847
145 L A 0.0000
146 A A -0.5017
147 E A -2.0742
148 R A -1.7545
149 I A 0.0000
150 G A -0.1044
151 S A -0.0762
152 A A 0.0000
153 E A -0.6335
154 R A -2.1728
155 R A -1.8597
156 N A 0.0000
157 A A 0.1673
158 L A 0.8725
159 A A 0.1683
160 I A 0.0000
161 D A -2.1152
162 D A -2.1090
163 V A 0.0000
164 G A -0.5249
165 E A -1.6043
166 Q A -0.5398
167 V A 0.0000
168 A A -0.4597
169 R A -1.8409
170 V A 0.0000
171 T A -0.3366
172 E A -2.0707
173 R A -1.7060
174 L A -0.1335
175 N A -0.3790
176 Q A -1.2796
177 R A -0.5570
178 H A -0.8138
179 E A -2.2234
180 R A -2.2029
181 S A -0.5329
182 A A 0.0194
1 M B 1.3289
2 L B 1.6501
3 G B -0.1730
4 A B 0.2976
5 V B 1.4447
6 E B -1.5029
7 T B -0.3954
8 A B -0.1890
9 N B -1.3077
10 P B -0.4716
11 A B 0.0025
12 T B -0.1119
13 G B -0.3045
14 V B 0.0297
15 Q B -1.0353
16 E B -1.9532
17 G B 0.0000
18 L B 0.0000
19 D B -1.8150
20 S B -0.4642
21 L B 0.0000
22 A B 0.0161
23 A B 0.0538
24 T B -0.0215
25 L B 0.0000
26 T B -0.2266
27 Q B -1.3544
28 K B -1.0558
29 M B -0.1147
30 E B -0.4188
31 A B -0.0377
32 A B 0.0000
33 R B 0.0338
34 L B 0.9702
35 E B -0.9680
36 M B 0.0000
37 A B 0.0000
38 A B -0.1346
39 K B -0.9738
40 L B -0.1583
41 R B -1.0437
42 E B -1.9590
43 S B -0.3541
44 A B -0.1188
45 D B -0.7237
46 G B -0.3623
47 R B -0.7632
48 F B 0.0000
49 D B -2.1178
50 R B -2.1627
51 M B 0.0000
52 E B -0.5141
53 R B -1.9567
54 K B -0.7742
55 L B 0.0000
56 G B -0.5331
57 E B -1.8568
58 M B 0.0000
59 A B 0.0292
60 A B 0.0309
61 H B -0.1624
62 V B 0.0000
63 Q B -0.9004
64 A B -0.1393
65 A B -0.0296
66 E B -0.3906
67 Q B -1.2590
68 R B -1.7207
69 S B -0.3148
70 A B -0.0723
71 Q B -0.4828
72 A B -0.0760
73 I B 0.0000
74 E B -1.5926
75 R B -2.0694
76 M B 0.0000
77 G B -0.3815
78 R B -2.0843
79 E B -1.6502
80 I B 0.0000
81 V B 1.5382
82 G B -0.1361
83 V B 0.1597
84 A B -0.0857
85 D B -1.6496
86 A B -0.2615
87 F B 0.0000
88 N B -0.8474
89 R B -2.0126
90 R B -0.8782
91 V B -0.0764
92 H B -0.9471
93 A B -0.1511
94 A B -0.0493
95 E B -0.3676
96 S B -0.4699
97 R B -1.5402
98 N B -0.4113
99 A B -0.0574
100 S B -0.2093
101 A B -0.0257
102 I B 0.0000
103 E B -2.0453
104 Q B -1.5266
105 V B 0.0000
106 G B -0.3413
107 G B -0.4456
108 E B -0.4505
109 V B 0.0000
110 A B -0.3018
111 R B -1.8014
112 I B -0.1278
113 A B 0.0000
114 A B 0.0238
115 S B -0.0363
116 V B 0.0000
117 E B -0.7118
118 H B -1.1673
119 K B -0.8134
120 L B 0.0000
121 N B -1.6055
122 R B -2.1174
123 A B -0.3575
124 D B -0.2137
125 S B -0.1344
126 V B 0.5183
127 Q B 0.0000
128 A B -0.1871
129 Q B -1.1207
130 A B -0.1925
131 L B 0.0000
132 E B -2.1252
133 K B -2.0269
134 L B 0.0000
135 G B -0.1002
136 G B -0.3839
137 E B -1.5722
138 I B 0.0000
139 A B -0.3130
140 R B -1.7883
141 I B -0.0423
142 T B 0.0000
143 E B -2.0225
144 K B -1.4554
145 L B 0.0000
146 A B -0.5037
147 E B -2.0656
148 R B -1.6691
149 I B 0.0000
150 G B -0.2575
151 S B -0.0708
152 A B 0.0000
153 E B -0.5598
154 R B -2.1785
155 R B -1.9597
156 N B 0.0000
157 A B 0.2989
158 L B 1.5539
159 A B 0.2920
160 I B 0.0000
161 D B -2.1165
162 D B -2.1098
163 V B 0.0000
164 G B -0.5068
165 E B -1.4943
166 Q B -0.6294
167 V B 0.0000
168 A B -0.4535
169 R B -1.8415
170 V B 0.0000
171 T B -0.3354
172 E B -2.1310
173 R B -2.0649
174 L B 0.0000
175 N B -0.4185
176 Q B -1.2849
177 R B -0.5681
178 H B -0.7851
179 E B -2.2147
180 R B -2.2001
181 S B -0.5368
182 A B 0.0194
1 M C 1.3336
2 L C 1.6525
3 G C -0.1702
4 A C 0.3006
5 V C 1.4452
6 E C -1.5034
7 T C -0.3970
8 A C -0.1893
9 N C -1.3074
10 P C -0.4705
11 A C 0.0015
12 T C -0.1860
13 G C -0.3576
14 V C 0.0453
15 Q C -0.9413
16 E C -1.9446
17 G C -0.3700
18 L C 0.0000
19 D C -1.8178
20 S C -0.4795
21 L C 0.0000
22 A C 0.0000
23 A C 0.0512
24 T C -0.0302
25 L C 0.0000
26 T C -0.2276
27 Q C -1.3585
28 K C -1.0776
29 M C -0.1126
30 E C -0.4138
31 A C -0.0391
32 A C 0.0162
33 R C 0.0000
34 L C 1.0252
35 E C -1.1655
36 M C 0.0000
37 A C 0.0133
38 A C -0.1781
39 K C -1.1812
40 L C 0.0000
41 R C -1.2195
42 E C -1.9839
43 S C -0.3461
44 A C -0.0646
45 D C -0.4540
46 G C -0.4162
47 R C -0.5645
48 F C 0.0000
49 D C -2.1042
50 R C -2.0872
51 M C 0.0000
52 E C -1.2517
53 R C -2.0758
54 K C -0.7084
55 L C 0.0000
56 G C -0.4958
57 E C -1.8502
58 M C 0.0000
59 A C 0.0233
60 A C 0.0283
61 H C -0.1717
62 V C 0.0000
63 Q C -0.8635
64 A C -0.1326
65 A C -0.0281
66 E C -0.3934
67 Q C -1.3083
68 R C -1.6764
69 S C -0.3060
70 A C -0.0752
71 Q C -0.5086
72 A C -0.0804
73 I C 0.0000
74 E C -1.9531
75 R C -2.1348
76 M C 0.0000
77 G C -0.4172
78 R C -2.0390
79 E C -1.3653
80 I C 0.0000
81 V C 1.2109
82 G C -0.1538
83 V C 0.2225
84 A C 0.0000
85 D C -1.2107
86 A C -0.1737
87 F C 0.0000
88 N C -1.0597
89 R C -2.0784
90 R C -1.0204
91 V C 0.0000
92 H C -0.9876
93 A C -0.1645
94 A C 0.0088
95 E C 0.0000
96 S C -0.5340
97 R C -1.9033
98 N C -0.4582
99 A C -0.0473
100 S C -0.2081
101 A C -0.0257
102 I C 0.0000
103 E C -2.0456
104 Q C -1.5267
105 V C 0.0000
106 G C -0.3416
107 G C -0.4567
108 E C -0.5177
109 V C 0.0000
110 A C -0.2873
111 R C -1.7726
112 I C 0.0000
113 A C 0.0000
114 A C 0.0236
115 S C -0.0331
116 V C 0.0000
117 E C -0.7063
118 H C -1.1669
119 K C -0.8140
120 L C 0.0000
121 N C -1.5996
122 R C -2.0883
123 A C -0.3552
124 D C -0.2463
125 S C -0.1344
126 V C 0.5339
127 Q C 0.0000
128 A C -0.1964
129 Q C -1.1931
130 A C -0.2063
131 L C 0.0000
132 E C -2.1257
133 K C -2.0274
134 L C 0.0000
135 G C -0.0819
136 G C -0.3627
137 E C -1.4559
138 I C 0.0000
139 A C -0.3129
140 R C -1.7877
141 I C -0.0363
142 T C 0.0000
143 E C -2.0333
144 K C -1.5154
145 L C 0.0000
146 A C -0.5004
147 E C -2.0758
148 R C -1.7626
149 I C 0.0000
150 G C -0.0797
151 S C -0.0703
152 A C 0.0000
153 E C -0.5894
154 R C -2.2019
155 R C -2.0712
156 N C 0.0000
157 A C 0.2996
158 L C 1.5537
159 A C 0.2916
160 I C 0.0000
161 D C -2.1158
162 D C -2.1106
163 V C 0.0000
164 G C -0.5203
165 E C -1.6472
166 Q C -0.6453
167 V C 0.0000
168 A C -0.3043
169 R C -1.8403
170 V C 0.0000
171 T C -0.3384
172 E C -2.1511
173 R C -2.1694
174 L C 0.0000
175 N C -0.4093
176 Q C -1.4128
177 R C -1.2934
178 H C -0.9291
179 E C -2.2206
180 R C -2.2032
181 S C -0.5329
182 A C 0.0196
1 M D 1.3277
2 L D 1.6500
3 G D -0.1754
4 A D 0.2936
5 V D 1.4471
6 E D -1.5053
7 T D -0.3913
8 A D -0.1884
9 N D -1.3071
10 P D -0.4686
11 A D 0.0021
12 T D -0.1380
13 G D -0.4360
14 V D 0.0173
15 Q D -1.0143
16 E D -1.9505
17 G D 0.0000
18 L D 0.0000
19 D D -1.8189
20 S D -0.4854
21 L D 0.0000
22 A D 0.0000
23 A D 0.0525
24 T D -0.0232
25 L D 0.0000
26 T D -0.2302
27 Q D -1.3224
28 K D -0.8727
29 M D -0.0958
30 E D -0.4953
31 A D -0.0541
32 A D -0.0198
33 R D 0.0276
34 L D 0.8040
35 E D -1.6126
36 M D 0.0000
37 A D 0.0124
38 A D -0.2233
39 K D -1.4630
40 L D 0.0000
41 R D -1.2614
42 E D -1.9918
43 S D -0.3507
44 A D -0.1153
45 D D -0.7454
46 G D -0.5247
47 R D -0.3821
48 F D 0.0000
49 D D -2.0565
50 R D -1.8165
51 M D 0.0000
52 E D -0.5239
53 R D -1.9529
54 K D -0.7432
55 L D 0.0000
56 G D -0.6203
57 E D -1.8726
58 M D 0.0000
59 A D 0.0292
60 A D 0.0193
61 H D -0.2270
62 V D 0.0000
63 Q D -0.9492
64 A D -0.1503
65 A D -0.0298
66 E D -0.3950
67 Q D -1.2376
68 R D -1.4699
69 S D -0.2847
70 A D -0.1445
71 Q D -0.8444
72 A D -0.1419
73 I D 0.0000
74 E D -2.1476
75 R D -2.1675
76 M D 0.0000
77 G D 0.0000
78 R D -2.0636
79 E D -1.5876
80 I D 0.0000
81 V D 0.9499
82 G D -0.2021
83 V D 0.2365
84 A D -0.1631
85 D D -1.8854
86 A D -0.3074
87 F D 0.0000
88 N D -1.4954
89 R D -2.0892
90 R D -0.6785
91 V D -0.0603
92 H D -0.9533
93 A D -0.1662
94 A D -0.0307
95 E D -0.2468
96 S D -0.5390
97 R D -1.8985
98 N D -0.4632
99 A D -0.0348
100 S D -0.2056
101 A D -0.0255
102 I D 0.0000
103 E D -2.0452
104 Q D -1.5265
105 V D 0.0000
106 G D -0.3361
107 G D -0.4329
108 E D -0.4783
109 V D 0.0000
110 A D -0.3024
111 R D -1.8031
112 I D -0.1360
113 A D 0.0000
114 A D 0.0179
115 S D -0.0669
116 V D 0.0000
117 E D -0.6467
118 H D -1.1536
119 K D -0.8012
120 L D 0.0000
121 N D -1.6055
122 R D -2.1161
123 A D -0.3794
124 D D -0.3243
125 S D -0.1166
126 V D 0.4998
127 Q D -0.0223
128 A D -0.2139
129 Q D -1.1387
130 A D -0.1956
131 L D 0.0000
132 E D -2.1235
133 K D -2.0251
134 L D 0.0000
135 G D -0.0787
136 G D -0.3712
137 E D -1.5322
138 I D 0.0000
139 A D -0.3133
140 R D -1.7898
141 I D -0.0422
142 T D 0.0000
143 E D -2.1249
144 K D -2.0277
145 L D 0.0000
146 A D -0.5001
147 E D -2.0025
148 R D -1.3589
149 I D 0.0000
150 G D -0.1001
151 S D -0.1806
152 A D -0.0686
153 E D -0.5724
154 R D -2.2184
155 R D -2.1748
156 N D 0.0000
157 A D 0.3012
158 L D 1.5536
159 A D 0.2882
160 I D 0.0000
161 D D -2.1167
162 D D -2.1107
163 V D 0.0000
164 G D -0.4883
165 E D -1.4006
166 Q D -0.4929
167 V D 0.0000
168 A D -0.3094
169 R D -1.8409
170 V D 0.0000
171 T D -0.3378
172 E D -2.0960
173 R D -1.8325
174 L D -0.1303
175 N D -0.4517
176 Q D -1.2895
177 R D -0.5461
178 H D -0.8910
179 E D -2.2374
180 R D -2.2015
181 S D -0.5299
182 A D 0.0193
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Laboratory of Theory of Biopolymers 2018