Project name: Pep5-Mut21-KLVFF

Status: done

Started: 2026-02-11 07:00:03
Settings
Chain sequence(s) A: RGDGWKPFVIGAAVLAALATAIAGIKLVFF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-1.9257
Maximal score value
2.6376
Average score
0.6776
Total score value
20.3292

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.9257
2 G A -1.0935
3 D A -1.8127
4 G A -0.5363
5 W A 0.8962
6 K A -0.9919
7 P A -0.0889
8 F A 2.1171
9 V A 2.0629
10 I A 2.2265
11 G A 0.3983
12 A A 0.0313
13 A A 0.3458
14 V A 1.7332
15 L A 1.8272
16 A A 0.3622
17 A A 0.3682
18 L A 1.5700
19 A A 0.3349
20 T A -0.0533
21 A A 0.3855
22 I A 2.0275
23 A A 0.3890
24 G A 0.1877
25 I A 1.6458
26 K A -1.0195
27 L A 1.5648
28 V A 2.4472
29 F A 2.6376
30 F A 2.2921
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Laboratory of Theory of Biopolymers 2018