| Chain sequence(s) |
B: GRKKRRQRRRPPQQRTESIIARALYYDLIS
input PDB |
| Selected Chain(s) | B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with B chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:30)
[INFO] Main: Simulation completed successfully. (00:00:30)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | B | -2.0505 | |
| 2 | R | B | -3.6918 | |
| 3 | K | B | -4.3744 | |
| 4 | K | B | -4.7460 | |
| 5 | R | B | -5.0095 | |
| 6 | R | B | -4.9213 | |
| 7 | Q | B | -4.5492 | |
| 8 | R | B | -4.5206 | |
| 9 | R | B | -4.4506 | |
| 10 | R | B | -3.8620 | |
| 11 | P | B | -2.6036 | |
| 12 | P | B | -2.5727 | |
| 13 | Q | B | -3.0155 | |
| 14 | Q | B | -3.3014 | |
| 15 | R | B | -2.8632 | |
| 16 | T | B | -1.5449 | |
| 17 | E | B | -2.1640 | |
| 18 | S | B | -0.8347 | |
| 19 | I | B | 1.3117 | |
| 20 | I | B | 1.2563 | |
| 21 | A | B | 0.9390 | |
| 22 | R | B | 0.3763 | |
| 23 | A | B | 1.3260 | |
| 24 | L | B | 2.7219 | |
| 25 | Y | B | 2.9273 | |
| 26 | Y | B | 2.2967 | |
| 27 | D | B | 0.8394 | |
| 28 | L | B | 2.7356 | |
| 29 | I | B | 3.0474 | |
| 30 | S | B | 1.1300 |