| Chain sequence(s) |
A: GGGHKGG
C: GGGHKGG B: GGGHKGG E: GGGHKGG D: GGGHKGG G: GGGHKGG F: GGGHKGG I: GGGHKGG H: GGGHKGG K: GGGHKGG J: GGGHKGG L: GGGHKGG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:42)
[INFO] Main: Simulation completed successfully. (00:02:45)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.2675 | |
| 2 | G | A | -1.3716 | |
| 3 | G | A | -2.0285 | |
| 4 | H | A | -2.9473 | |
| 5 | K | A | -3.6755 | |
| 6 | G | A | 0.0000 | |
| 7 | G | A | -1.8064 | |
| 1 | G | B | -1.1396 | |
| 2 | G | B | -1.3323 | |
| 3 | G | B | -1.8834 | |
| 4 | H | B | -2.6275 | |
| 5 | K | B | -3.4148 | |
| 6 | G | B | 0.0000 | |
| 7 | G | B | -1.6089 | |
| 1 | G | C | -1.1444 | |
| 2 | G | C | -1.3824 | |
| 3 | G | C | -2.0351 | |
| 4 | H | C | -2.6990 | |
| 5 | K | C | -3.4185 | |
| 6 | G | C | -2.2742 | |
| 7 | G | C | -1.5038 | |
| 1 | G | D | -1.2560 | |
| 2 | G | D | -1.4608 | |
| 3 | G | D | -2.1644 | |
| 4 | H | D | -3.0923 | |
| 5 | K | D | -3.9484 | |
| 6 | G | D | 0.0000 | |
| 7 | G | D | -1.9668 | |
| 1 | G | E | -1.1818 | |
| 2 | G | E | -1.2819 | |
| 3 | G | E | -1.7836 | |
| 4 | H | E | -2.9224 | |
| 5 | K | E | -3.9735 | |
| 6 | G | E | -3.2868 | |
| 7 | G | E | -1.8853 | |
| 1 | G | F | -1.1707 | |
| 2 | G | F | -1.2092 | |
| 3 | G | F | -1.7542 | |
| 4 | H | F | -2.7026 | |
| 5 | K | F | -3.6175 | |
| 6 | G | F | 0.0000 | |
| 7 | G | F | -1.8552 | |
| 1 | G | G | -1.2156 | |
| 2 | G | G | -1.2503 | |
| 3 | G | G | -1.7977 | |
| 4 | H | G | -3.0039 | |
| 5 | K | G | -3.8497 | |
| 6 | G | G | 0.0000 | |
| 7 | G | G | -1.9605 | |
| 1 | G | H | -1.2394 | |
| 2 | G | H | -1.5015 | |
| 3 | G | H | -2.1408 | |
| 4 | H | H | -3.3416 | |
| 5 | K | H | -4.1346 | |
| 6 | G | H | 0.0000 | |
| 7 | G | H | -2.0403 | |
| 1 | G | I | -1.0422 | |
| 2 | G | I | -1.5099 | |
| 3 | G | I | -2.0142 | |
| 4 | H | I | -3.1702 | |
| 5 | K | I | -3.7048 | |
| 6 | G | I | -2.8747 | |
| 7 | G | I | -1.6058 | |
| 1 | G | J | -1.0550 | |
| 2 | G | J | -1.4714 | |
| 3 | G | J | -1.8642 | |
| 4 | H | J | -3.0040 | |
| 5 | K | J | -3.6936 | |
| 6 | G | J | -3.0737 | |
| 7 | G | J | -1.6401 | |
| 1 | G | K | -1.2755 | |
| 2 | G | K | -1.4371 | |
| 3 | G | K | -1.9818 | |
| 4 | H | K | -2.8983 | |
| 5 | K | K | -3.6170 | |
| 6 | G | K | 0.0000 | |
| 7 | G | K | -1.8070 | |
| 1 | G | L | -1.2528 | |
| 2 | G | L | -1.3454 | |
| 3 | G | L | -1.8192 | |
| 4 | H | L | -2.6310 | |
| 5 | K | L | -3.7124 | |
| 6 | G | L | 0.0000 | |
| 7 | G | L | -1.7608 |