Project name: obj1 [mutate: GA10C, VQ12C, CL22C, SN120C]

Status: done

Started: 2025-02-10 14:44:28
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues CL22C,VQ12C,SN120C,GA10C
Energy difference between WT (input) and mutated protein (by FoldX) 14.7255 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:28)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:38)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:04)
Show buried residues

Minimal score value
-3.3333
Maximal score value
1.8657
Average score
-0.6648
Total score value
-79.7733

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0219
2 V C -0.9489
3 Q C -1.1259
4 L C 0.0000
5 V C 1.1275
6 E C 0.5070
7 S C -0.2257
8 G C -0.6974
9 G C 0.1795
10 A C 1.1173 mutated: GA10C
11 L C 1.3597
12 Q C -0.5172 mutated: VQ12C
13 Q C -1.7547
14 P C -1.8244
15 G C -1.4308
16 G C -1.0029
17 S C -1.2219
18 L C -0.9205
19 R C -2.1005
20 L C 0.0000
21 S C -0.4364
22 L C 0.0000 mutated: CL22C
23 A C 0.0007
24 A C 0.0000
25 S C -0.1178
26 D C 0.0000
27 F C 1.5451
28 T C 0.2509
29 F C 0.0000
30 R C -2.0325
31 S C -0.8863
32 Y C -1.2160
33 E C -1.1454
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.2969
40 A C -0.9843
41 P C -1.2937
42 G C -1.4348
43 K C -2.1350
44 G C -1.0592
45 L C 0.3948
46 E C -0.3909
47 W C 0.3405
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5831
53 G C -1.2447
54 S C -1.2286
55 G C -1.0817
56 G C -0.7345
57 S C -0.3025
58 T C 0.1989
59 Y C 0.6077
60 Y C -0.3557
61 A C -1.1382
62 D C -2.3439
63 S C -1.7141
64 V C 0.0000
65 K C -2.3844
66 G C -1.6176
67 R C 0.0000
68 F C 0.0000
69 T C -0.6719
70 I C 0.0000
71 S C -0.5621
72 R C -1.3626
73 D C -1.9805
74 N C -2.1901
75 S C -1.7905
76 K C -2.3163
77 N C -1.6453
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6685
81 L C 0.0000
82 Q C -1.2160
83 M C 0.0000
84 N C -1.2871
85 S C -1.1913
86 L C 0.0000
87 R C -2.7161
88 A C -2.3194
89 E C -2.4980
90 D C 0.0000
91 T C -0.5639
92 A C 0.0000
93 I C 1.1155
94 Y C 0.0000
95 Y C 0.7183
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1907
101 D C -3.3333
102 G C -2.0866
103 F C -1.2310
104 N C -2.4286
105 K C -3.1848
106 G C -1.9076
107 F C -0.9859
108 D C -1.1040
109 Y C -0.2190
110 W C 0.6259
111 G C 0.1075
112 Q C -0.7347
113 G C 0.2210
114 T C 0.7286
115 L C 1.8657
116 V C 0.0000
117 T C 0.1755
118 V C 0.0000
119 S C -1.4339
120 N C -2.1903 mutated: SN120C
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Laboratory of Theory of Biopolymers 2018