Project name: query_structure

Status: done

Started: 2026-03-16 23:46:04
Settings
Chain sequence(s) A: GTLPCGESCVWIPCISSVVGCSCKSKVCYKD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:20)
Show buried residues

Minimal score value
-2.0928
Maximal score value
2.861
Average score
0.2652
Total score value
8.2227

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.3099
2 T A -0.3220
3 L A 0.4605
4 P A -0.1671
5 C A 0.1950
6 G A -0.1932
7 E A 0.0651
8 S A 0.2454
9 C A 0.7859
10 V A 1.0875
11 W A 1.9994
12 I A 2.3795
13 P A 1.3723
14 C A 0.0000
15 I A 2.6652
16 S A 1.8656
17 S A 1.6915
18 V A 2.8610
19 V A 2.5583
20 G A 0.5886
21 C A 0.0000
22 S A -0.5202
23 C A -0.5001
24 K A -1.8693
25 S A -1.3755
26 K A -1.3422
27 V A -0.8044
28 C A 0.0000
29 Y A -0.9424
30 K A -1.1590
31 D A -2.0928
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018