Project name: query_structure

Status: done

Started: 2026-03-17 01:18:52
Settings
Chain sequence(s) A: VSSVPTKLEVVAATPTSLLISWDAGGYYVQYYRITYGETGGNSPVQEFTVPGSSSTATISGLKPGVDYTITVYAWDWEWDYWFYYSPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:35)
Show buried residues

Minimal score value
-2.6528
Maximal score value
3.5291
Average score
-0.2037
Total score value
-19.1486

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.8153
2 S A 1.1842
3 S A 1.4778
4 V A 0.6682
5 P A 0.0000
6 T A -1.6584
7 K A -2.6528
8 L A 0.0000
9 E A -1.8892
10 V A 0.0883
11 V A 1.5275
12 A A 0.8894
13 A A 0.2879
14 T A -0.5295
15 P A -1.1448
16 T A -1.0066
17 S A -0.5322
18 L A 0.0000
19 L A 0.7332
20 I A 0.0000
21 S A -0.8003
22 W A 0.0000
23 D A -2.6077
24 A A -0.8701
25 G A -0.0088
26 G A 0.6175
27 Y A 1.7959
28 Y A 1.7058
29 V A 0.0000
30 Q A 0.2273
31 Y A 0.1811
32 Y A 0.0000
33 R A -0.4770
34 I A 0.0000
35 T A 0.0000
36 Y A -0.3948
37 G A 0.0000
38 E A -1.5587
39 T A -1.2333
40 G A -1.3226
41 G A -1.2285
42 N A -1.6587
43 S A -0.8546
44 P A -0.3642
45 V A 0.3087
46 Q A -1.1871
47 E A -1.8202
48 F A -0.7145
49 T A -0.2016
50 V A 0.0171
51 P A -0.3083
52 G A -0.0100
53 S A -0.1843
54 S A -0.4692
55 S A -0.6493
56 T A -0.2804
57 A A 0.0000
58 T A 0.2511
59 I A 0.0000
60 S A -0.6578
61 G A -1.0308
62 L A 0.0000
63 K A -2.3525
64 P A -1.6639
65 G A -1.4554
66 V A -1.4170
67 D A -1.9049
68 Y A -1.1861
69 T A -0.6983
70 I A 0.0000
71 T A -0.3493
72 V A 0.0000
73 Y A 0.5343
74 A A 0.7901
75 W A 0.5562
76 D A 0.0038
77 W A 0.1797
78 E A -1.0265
79 W A 0.1003
80 D A -0.2897
81 Y A 1.7697
82 W A 2.9772
83 F A 3.5291
84 Y A 3.2833
85 Y A 2.5507
86 S A 1.1958
87 P A 0.5695
88 I A 0.0436
89 S A -0.5254
90 I A -0.7045
91 N A -1.6782
92 Y A -1.4497
93 R A -2.4949
94 T A -1.5056
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018