| Chain sequence(s) |
A: GGKGHGG
C: GGKGHGG B: GGKGHGG E: GGKGHGG D: GGKGHGG G: GGKGHGG F: GGKGHGG H: GGKGHGG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:25)
[INFO] Main: Simulation completed successfully. (00:02:26)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | 0.0000 | |
| 2 | G | A | -3.1163 | |
| 3 | K | A | -3.6073 | |
| 4 | G | A | -2.9934 | |
| 5 | H | A | 0.0000 | |
| 6 | G | A | -2.6785 | |
| 7 | G | A | -2.7387 | |
| 1 | G | B | 0.0000 | |
| 2 | G | B | -2.4374 | |
| 3 | K | B | -3.3039 | |
| 4 | G | B | -2.9969 | |
| 5 | H | B | -2.7319 | |
| 6 | G | B | -2.6294 | |
| 7 | G | B | -1.6901 | |
| 1 | G | C | -0.9883 | |
| 2 | G | C | -1.5981 | |
| 3 | K | C | -2.4492 | |
| 4 | G | C | -2.5662 | |
| 5 | H | C | -3.2364 | |
| 6 | G | C | 0.0000 | |
| 7 | G | C | 0.0000 | |
| 1 | G | D | -2.7711 | |
| 2 | G | D | -2.8525 | |
| 3 | K | D | -3.5625 | |
| 4 | G | D | 0.0000 | |
| 5 | H | D | -2.9714 | |
| 6 | G | D | -2.6190 | |
| 7 | G | D | -2.1159 | |
| 1 | G | E | -2.0154 | |
| 2 | G | E | -2.3739 | |
| 3 | K | E | -3.3178 | |
| 4 | G | E | -2.9852 | |
| 5 | H | E | -3.0973 | |
| 6 | G | E | 0.0000 | |
| 7 | G | E | -2.2537 | |
| 1 | G | F | -2.6797 | |
| 2 | G | F | 0.0000 | |
| 3 | K | F | -3.4015 | |
| 4 | G | F | -3.1606 | |
| 5 | H | F | -3.2517 | |
| 6 | G | F | -2.6031 | |
| 7 | G | F | -2.2433 | |
| 1 | G | G | -1.3043 | |
| 2 | G | G | -2.0911 | |
| 3 | K | G | -2.8042 | |
| 4 | G | G | -2.6807 | |
| 5 | H | G | -3.0829 | |
| 6 | G | G | -2.4666 | |
| 7 | G | G | 0.0000 | |
| 1 | G | H | -2.1368 | |
| 2 | G | H | -2.4267 | |
| 3 | K | H | -3.0535 | |
| 4 | G | H | -2.0721 | |
| 5 | H | H | -2.2933 | |
| 6 | G | H | -1.3647 | |
| 7 | G | H | -1.0425 |