Project name: 9dc72d7da8f3342

Status: done

Started: 2025-08-11 09:29:52
Settings
Chain sequence(s) A: SWNPPTFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDSRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISLAPKAQIKESLRAELRVTE
H: QVQLVQSGVEVKKPGASVKVSCKASGYTFTNYYMYWVRQAPGQGLEWMGGINPSNGGTNFNEKFKNRVTLTTDSSTTTAYMELKSLQFDDTAVYYCARRDYRFDMGFDYWGQGTTVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASKGVSTSGYSYLHWYQQKPGQAPRLLIYLASYLESGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHSRDLPLTFGGGTKVEIK
input PDB
Selected Chain(s) A,H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:09)
Show buried residues

Minimal score value
-4.2729
Maximal score value
1.4964
Average score
-0.6611
Total score value
-229.3924

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -0.4526
2 W A -0.8789
3 N A -1.5784
4 P A -1.1781
5 P A 0.0000
6 T A -0.4571
7 F A 0.0000
8 S A -0.1365
9 P A 0.2134
10 A A 0.2891
11 L A 1.1080
12 L A 1.0740
13 V A 1.4964
14 V A -0.6752
15 T A -2.0184
16 E A -3.5356
17 G A -3.0412
18 D A -2.7351
19 N A -2.6306
20 A A 0.0000
21 T A -0.5132
22 F A 0.0000
23 T A -0.2922
24 C A 0.0000
25 S A -1.0545
26 F A 0.0000
27 S A -1.5820
28 N A -1.4666
29 T A -1.3307
30 S A -1.3886
31 E A -2.0209
32 S A -0.9479
33 F A -0.3415
34 V A 0.0000
35 L A 0.0000
36 N A 0.0000
37 W A 0.0000
38 Y A 0.0000
39 R A -1.6868
40 M A -1.7063
41 S A -1.3292
42 P A -1.0630
43 S A -1.3067
44 N A -2.1600
45 Q A -2.1590
46 T A -1.3348
47 D A -1.2426
48 K A 0.0000
49 L A 0.0000
50 A A 0.0000
51 A A 0.0000
52 F A 0.1275
53 P A 0.0000
54 E A -0.9983
55 D A 0.0000
56 R A -2.2340
57 S A 0.0000
58 Q A 0.0000
59 P A 0.0000
60 G A -1.5424
61 Q A -1.7957
62 D A -1.9931
63 S A -1.3229
64 R A -1.1986
65 F A -0.8494
66 R A -0.6120
67 V A -0.1949
68 T A -0.3988
69 Q A -1.0064
70 L A -0.9141
71 P A -1.1510
72 N A -1.9584
73 G A -1.9590
74 R A -2.3728
75 D A -1.4776
76 F A 0.0000
77 H A -0.4526
78 M A 0.0000
79 S A -0.7395
80 V A 0.0000
81 V A -1.6241
82 R A -3.1574
83 A A 0.0000
84 R A -4.2729
85 R A -4.0186
86 N A -2.9315
87 D A 0.0000
88 S A -1.8856
89 G A -1.4818
90 T A -1.4309
91 Y A 0.0000
92 L A 0.0000
93 C A 0.0000
94 G A 0.0000
95 A A 0.0000
96 I A 0.0000
97 S A -0.3520
98 L A 0.0000
99 A A -0.4994
100 P A -1.0310
101 K A -1.9409
102 A A -1.1857
103 Q A -1.1828
104 I A -0.3745
105 K A -0.8591
106 E A -0.8827
107 S A -0.3295
108 L A 0.4242
109 R A -1.4081
110 A A 0.0000
111 E A -1.1922
112 L A 0.0000
113 R A -1.5653
114 V A 0.0000
115 T A -2.0800
116 E A -2.6021
117 Q H -1.2237
118 V H -0.3903
119 Q H -0.7039
120 L H 0.0000
121 V H -0.2741
122 Q H 0.0000
123 S H -0.4408
124 G H 0.0547
125 V H 1.3343
126 E H 0.3098
127 V H 0.9719
128 K H -0.7528
129 K H -1.7726
130 P H -1.3751
131 G H -1.3136
132 A H -1.2917
133 S H -1.5675
134 V H 0.0000
135 K H -1.9710
136 V H 0.0000
137 S H -0.6449
138 C H 0.0000
139 K H -0.8571
140 A H 0.0000
141 S H -0.6394
142 G H -0.7924
143 Y H -0.2545
144 T H -0.1931
145 F H 0.0000
146 T H -0.5751
147 N H -0.5467
148 Y H -0.1873
149 Y H 0.0000
150 M H 0.0000
151 Y H 0.0000
152 W H 0.0000
153 V H 0.0000
154 R H 0.0000
155 Q H -0.5016
156 A H -0.6463
157 P H -0.9561
158 G H -0.8715
159 Q H -1.0966
160 G H 0.0000
161 L H 0.0000
162 E H -1.0634
163 W H 0.0000
164 M H 0.0000
165 G H 0.0000
166 G H 0.0000
167 I H 0.0000
168 N H 0.0000
169 P H -0.7953
170 S H -1.0830
171 N H -1.6159
172 G H -1.1401
173 G H -1.1221
174 T H -0.5221
175 N H -0.4991
176 F H -0.9234
177 N H 0.0000
178 E H -3.1624
179 K H -3.2475
180 F H -2.4477
181 K H -3.2481
182 N H -2.9112
183 R H -2.2023
184 V H 0.0000
185 T H -0.9208
186 L H -0.1651
187 T H -0.3486
188 T H -0.6545
189 D H -0.9572
190 S H -0.6916
191 S H -0.5473
192 T H -0.5823
193 T H -0.6444
194 T H 0.0000
195 A H 0.0000
196 Y H -0.4735
197 M H 0.0000
198 E H -1.5023
199 L H 0.0000
200 K H -1.8739
201 S H -1.5758
202 L H 0.0000
203 Q H -1.3255
204 F H 0.2318
205 D H -1.2288
206 D H 0.0000
207 T H -0.1343
208 A H -0.0088
209 V H 0.3479
210 Y H 0.0000
211 Y H 0.0000
212 C H 0.0000
213 A H 0.0000
214 R H 0.0000
215 R H 0.0000
216 D H -0.4769
217 Y H 0.0000
218 R H -0.4117
219 F H 0.0000
220 D H 0.0000
221 M H 0.0684
222 G H 0.0000
223 F H 0.0000
224 D H -0.3892
225 Y H 0.0875
226 W H 0.0000
227 G H 0.0000
228 Q H -1.1847
229 G H -0.3938
230 T H 0.0000
231 T H 0.5233
232 V H 0.0000
233 T H 0.5157
234 V H 0.0000
235 S H -0.2961
236 S H -0.5960
237 E L -1.5763
238 I L -0.2918
239 V L 0.4747
240 L L 0.0000
241 T L -0.5618
242 Q L -0.9133
243 S L -0.6965
244 P L -0.3694
245 A L -0.3333
246 T L -0.4820
247 L L -0.3031
248 S L -0.4402
249 L L -0.7158
250 S L -1.0043
251 P L -1.4581
252 G L -1.8022
253 E L -2.2519
254 R L -2.5279
255 A L 0.0000
256 T L -0.5060
257 L L 0.0000
258 S L -1.0055
259 C L 0.0000
260 R L -2.3570
261 A L 0.0000
262 S L -1.3517
263 K L -2.0713
264 G L -1.2675
265 V L 0.0000
266 S L -0.7749
267 T L -0.5959
268 S L -0.6971
269 G L -1.0421
270 Y L -0.7096
271 S L -0.5511
272 Y L 0.0000
273 L L 0.0000
274 H L 0.0000
275 W L 0.0000
276 Y L 0.0000
277 Q L 0.0000
278 Q L 0.0000
279 K L -1.6028
280 P L -1.1224
281 G L -1.3610
282 Q L -2.0085
283 A L -1.3057
284 P L 0.0000
285 R L -1.3717
286 L L 0.0000
287 L L 0.0000
288 I L 0.0000
289 Y L 0.0000
290 L L 0.0000
291 A L -0.1565
292 S L -0.1783
293 Y L 0.3231
294 L L 0.3215
295 E L -0.5016
296 S L -0.7239
297 G L -0.4791
298 V L -0.2438
299 P L -0.2024
300 A L -0.1409
301 R L -0.7194
302 F L 0.0000
303 S L -0.2145
304 G L -0.2977
305 S L -0.8079
306 G L -1.3291
307 S L -1.2371
308 G L -1.6197
309 T L -2.0191
310 D L -2.9293
311 F L 0.0000
312 T L -1.0014
313 L L 0.0000
314 T L -0.5885
315 I L 0.0000
316 S L -1.3955
317 S L -1.8006
318 L L 0.0000
319 E L -2.1844
320 P L -1.4746
321 E L -2.4027
322 D L 0.0000
323 F L 0.0000
324 A L 0.0000
325 V L 0.0000
326 Y L 0.0000
327 Y L 0.0000
328 C L 0.0000
329 Q L 0.0000
330 H L 0.0000
331 S L 0.0000
332 R L 0.0000
333 D L -0.7443
334 L L -0.2508
335 P L -0.6488
336 L L 0.0000
337 T L -0.0697
338 F L 0.0000
339 G L -0.3535
340 G L -0.5345
341 G L 0.0000
342 T L 0.0000
343 K L -1.0407
344 V L 0.0000
345 E L -0.7030
346 I L 0.6371
347 K L -0.9935
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Laboratory of Theory of Biopolymers 2018