Project name: twst

Status: done

Started: 2025-03-03 15:45:14
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Chain sequence(s) C: EVQLQESGGGLVQPGGSLRLSCASSGSIFSYKDMAWYRRAPGKERWLVGIITRGDYTNYDASVKGRFTISKDNAKNMMYLQMNSLKPEDTAVYYCRYWGDNIWGQGTQVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:38)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:38)
Show buried residues

Minimal score value
-2.3162
Maximal score value
1.5549
Average score
-0.3409
Total score value
-38.5226

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -1.7717
2 V C -0.2942
3 Q C -1.1499
4 L C 0.0000
5 Q C -1.2473
6 E C -0.5313
7 S C -0.2907
8 G C -0.2438
9 G C -0.3532
10 G C 0.0658
11 L C 1.5549
12 V C 0.2706
13 Q C -1.1710
14 P C -0.3653
15 G C -0.5008
16 G C -0.1973
17 S C -0.2253
18 L C -0.1365
19 R C -1.8327
20 L C 0.0000
21 S C -0.0121
22 C C 0.0000
23 A C -0.0968
24 S C 0.0000
25 S C -0.2353
26 G C -0.2004
27 S C -0.2355
28 I C 0.0000
29 F C 0.0000
30 S C 0.0193
31 Y C 1.1819
32 K C -0.0908
33 D C -0.3758
34 M C 0.0000
35 A C 0.0000
36 W C 0.0000
37 Y C 0.1498
38 R C -0.3009
39 R C -0.8227
40 A C -0.1483
41 P C -0.3385
42 G C -0.8253
43 K C -2.1223
44 E C -2.3162
45 R C -1.1906
46 W C 1.0887
47 L C 0.6807
48 V C 0.0000
49 G C 0.0000
50 I C 0.3053
51 I C 0.0000
52 T C -0.3849
53 R C -1.8471
54 G C -1.1174
55 D C -1.6314
56 Y C 0.9809
57 T C 0.0988
58 N C -0.6570
59 Y C -0.0024
60 D C -0.3714
61 A C -0.0584
62 S C -0.2022
63 V C 0.0000
64 K C -1.7864
65 G C -0.8385
66 R C -0.3975
67 F C 0.0000
68 T C -0.0453
69 I C 0.0000
70 S C -0.2208
71 K C -0.3956
72 D C -1.2118
73 N C -1.0656
74 A C -0.4128
75 K C -1.7171
76 N C -0.5348
77 M C 0.1269
78 M C 0.0000
79 Y C 0.2116
80 L C 0.0000
81 Q C -0.4843
82 M C 0.0000
83 N C -0.7080
84 S C -0.3525
85 L C 0.0000
86 K C -1.0561
87 P C -0.6873
88 E C -1.8504
89 D C 0.0000
90 T C -0.0180
91 A C 0.0000
92 V C 0.1279
93 Y C 0.0000
94 Y C 0.0000
95 C C 0.0000
96 R C -0.2174
97 Y C 0.2542
98 W C 0.5999
99 G C -0.4893
100 D C -1.1052
101 N C -1.3735
102 I C 0.0603
103 W C 0.2345
104 G C -0.2249
105 Q C -1.2262
106 G C -0.3272
107 T C -0.2788
108 Q C -1.1645
109 V C 0.0000
110 T C -0.0122
111 V C 0.0000
112 S C -0.1960
113 S C -0.2419
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Laboratory of Theory of Biopolymers 2018