| Chain sequence(s) |
H: EVQLVESGGGVVQPGGSLKLSCVASGTDFSINFIRWYRQAPGKQREFVAGFTATGNTNYADSMKGRFTISRDNTKNAVYLQIDSLKPEDTAVYYCYMLDKWGQGTQVTVSS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VA5H |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.587625 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:33)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:35)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:02)
[INFO] Main: Simulation completed successfully. (00:01:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.1230 | |
| 2 | V | H | -1.8938 | |
| 3 | Q | H | -1.4365 | |
| 4 | L | H | -0.2845 | |
| 5 | A | H | -0.0759 | mutated: VA5H |
| 6 | E | H | -0.3174 | |
| 7 | S | H | -0.7393 | |
| 9 | G | H | -1.1647 | |
| 10 | G | H | -0.7354 | |
| 11 | G | H | 0.2912 | |
| 12 | V | H | 1.2828 | |
| 13 | V | H | 0.0446 | |
| 14 | Q | H | -1.3375 | |
| 15 | P | H | -1.3665 | |
| 16 | G | H | -1.4530 | |
| 17 | G | H | -0.8909 | |
| 18 | S | H | -1.0670 | |
| 19 | L | H | -0.7838 | |
| 20 | K | H | -1.8882 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.3002 | |
| 23 | C | H | 0.0000 | |
| 24 | V | H | 0.6995 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.1551 | |
| 27 | G | H | -1.6246 | |
| 29 | T | H | -1.6434 | |
| 30 | D | H | -1.8937 | |
| 31 | F | H | 0.0000 | |
| 32 | S | H | -0.7885 | |
| 33 | I | H | -0.0781 | |
| 39 | N | H | -0.2489 | |
| 40 | F | H | 0.5012 | |
| 41 | I | H | 0.0000 | |
| 42 | R | H | -0.0276 | |
| 43 | W | H | 0.0000 | |
| 44 | Y | H | -0.1071 | |
| 45 | R | H | 0.0000 | |
| 46 | Q | H | -1.4587 | |
| 47 | A | H | -1.5511 | |
| 48 | P | H | -1.1185 | |
| 49 | G | H | -1.6112 | |
| 50 | K | H | -2.7047 | |
| 51 | Q | H | -2.5265 | |
| 52 | R | H | -1.6898 | |
| 53 | E | H | -1.0053 | |
| 54 | F | H | -0.2505 | |
| 55 | V | H | 0.0000 | |
| 56 | A | H | 0.0000 | |
| 57 | G | H | 0.0000 | |
| 58 | F | H | -0.5610 | |
| 59 | T | H | -0.6519 | |
| 60 | A | H | -0.5057 | |
| 65 | T | H | -0.5568 | |
| 66 | G | H | -1.1668 | |
| 67 | N | H | -1.5751 | |
| 68 | T | H | -1.2052 | |
| 69 | N | H | -1.8102 | |
| 70 | Y | H | -1.2963 | |
| 71 | A | H | -1.3970 | |
| 72 | D | H | -2.4989 | |
| 73 | S | H | -1.5901 | |
| 74 | M | H | 0.0000 | |
| 75 | K | H | -2.7324 | |
| 76 | G | H | -1.7798 | |
| 77 | R | H | -1.4365 | |
| 78 | F | H | 0.0000 | |
| 79 | T | H | -0.8995 | |
| 80 | I | H | 0.0000 | |
| 81 | S | H | -0.4921 | |
| 82 | R | H | -1.0241 | |
| 83 | D | H | -1.5238 | |
| 84 | N | H | -2.2951 | |
| 85 | T | H | -1.7415 | |
| 86 | K | H | -2.2513 | |
| 87 | N | H | -1.6592 | |
| 88 | A | H | 0.0000 | |
| 89 | V | H | 0.0000 | |
| 90 | Y | H | -0.0957 | |
| 91 | L | H | 0.0000 | |
| 92 | Q | H | -1.0524 | |
| 93 | I | H | 0.0000 | |
| 94 | D | H | -1.5861 | |
| 95 | S | H | -1.3439 | |
| 96 | L | H | 0.0000 | |
| 97 | K | H | -2.5031 | |
| 98 | P | H | -2.0388 | |
| 99 | E | H | -2.3827 | |
| 100 | D | H | 0.0000 | |
| 101 | T | H | -0.8599 | |
| 102 | A | H | 0.0000 | |
| 103 | V | H | -0.3390 | |
| 104 | Y | H | 0.0000 | |
| 105 | Y | H | -0.1906 | |
| 106 | C | H | 0.0000 | |
| 107 | Y | H | -0.1298 | |
| 108 | M | H | 0.0000 | |
| 109 | L | H | -0.4272 | |
| 137 | D | H | -1.8833 | |
| 138 | K | H | -1.6556 | |
| 139 | W | H | -0.6222 | |
| 140 | G | H | -0.6208 | |
| 141 | Q | H | -1.0491 | |
| 142 | G | H | -0.7563 | |
| 143 | T | H | -0.9121 | |
| 144 | Q | H | -0.8441 | |
| 145 | V | H | 0.0000 | |
| 146 | T | H | -0.2089 | |
| 147 | V | H | 0.0000 | |
| 148 | S | H | -0.7849 | |
| 149 | S | H | -0.5041 |