Project name: query_structure

Status: done

Started: 2026-03-17 00:53:18
Settings
Chain sequence(s) A: VQLVVESGGGLLVVQQPGGSLTLSCTASGFTLDHYDIGWFRQAPGKKEREEGVSSCINNSDDDTYYADSVKKGGRFTTIFMNNAKDTVYLQMMNSLKKPEEDTAIYYCAEARGCKRGRYYEYDFWGQQGTQVTVSSS
B: DRRKAAVSHWQ
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:37)
Show buried residues

Minimal score value
-3.6149
Maximal score value
1.1629
Average score
-0.935
Total score value
-122.4894

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 V A 0.2370
3 Q A -0.5856
4 L A 0.0000
5 V A 0.3120
6 E A 0.0000
7 S A -0.5120
8 G A -0.6308
9 G A -0.4419
10 G A 0.1549
11 L A 0.9984
12 V A 0.0340
13 Q A -1.2304
14 P A -1.4092
15 G A -1.2945
16 G A -0.8630
17 S A -0.6669
18 L A -0.0644
19 T A -0.2724
20 L A 0.0000
21 S A 0.0247
22 C A 0.0000
23 T A 0.0008
24 A A 0.0000
25 S A 0.0500
26 G A 0.0882
27 F A 1.1629
28 T A -0.1654
29 L A 0.0000
30 D A -1.7724
31 H A -1.7424
32 Y A -1.0237
33 D A -1.8379
34 I A 0.0000
35 G A 0.0000
36 W A 0.0000
37 F A 0.0000
38 R A 0.0000
39 Q A -1.4245
40 A A -1.6716
41 P A -1.4651
42 G A -1.7821
43 K A -2.8844
44 E A -2.5966
45 R A 0.0000
46 E A -1.4508
47 G A 0.0000
48 V A 0.0000
49 S A 0.0000
50 C A 0.0000
51 I A 0.0000
52 N A 0.0000
53 N A -2.3199
54 S A -2.4157
55 D A -3.4067
56 D A -3.4874
57 D A -2.9481
58 T A -1.3186
59 Y A -1.4017
60 Y A -1.4856
61 A A 0.0000
62 D A -2.8570
63 S A -1.8322
64 V A 0.0000
65 K A -2.7665
66 G A -1.8112
67 R A -1.4423
68 F A 0.0000
69 T A -0.4439
70 I A 0.0000
71 F A 0.2778
72 M A -0.6925
73 N A -1.5319
74 N A -2.0116
75 A A -1.4050
76 K A -1.8986
77 D A -1.0186
78 T A 0.0000
79 V A 0.0000
80 Y A 0.1484
81 L A 0.0000
82 Q A -0.3460
83 M A 0.0000
84 N A -1.2741
85 S A -1.1380
86 L A 0.0000
87 K A -1.8435
88 P A -1.7097
89 E A -2.2169
90 D A 0.0000
91 T A -0.7969
92 A A 0.0000
93 I A -0.3176
94 Y A 0.0000
95 Y A -0.0795
96 C A 0.0000
97 A A 0.0000
98 E A -0.8647
99 A A 0.0000
100 R A -2.4402
101 G A -2.4362
102 C A 0.0000
103 K A -3.3214
104 R A -3.0497
105 G A -2.1638
106 R A -2.8061
107 Y A -1.9793
108 E A -2.9943
109 Y A 0.0000
110 D A -2.1722
111 F A 0.0000
112 W A -0.7755
113 G A -0.6501
114 Q A -1.3058
115 G A -0.6395
116 T A -0.7983
117 Q A -1.0939
118 V A 0.0000
119 T A -0.2056
120 V A 0.0000
121 S A -0.6992
122 S A -0.6130
2 D B -3.2595
3 R B -3.6149
4 K B -3.0267
5 A B -2.3772
6 A B 0.0000
7 V B -1.8260
8 S B 0.0000
9 H B -2.4738
10 W B 0.0000
11 Q B -2.3864
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018