| Chain sequence(s) |
A: VQLVVESGGGLLVVQQPGGSLTLSCTASGFTLDHYDIGWFRQAPGKKEREEGVSSCINNSDDDTYYADSVKKGGRFTTIFMNNAKDTVYLQMMNSLKKPEEDTAIYYCAEARGCKRGRYYEYDFWGQQGTQVTVSSS
B: DRRKAAVSHWQ input PDB |
| Selected Chain(s) | A,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:36)
[INFO] Main: Simulation completed successfully. (00:01:37)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 2 | V | A | 0.2370 | |
| 3 | Q | A | -0.5856 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.3120 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5120 | |
| 8 | G | A | -0.6308 | |
| 9 | G | A | -0.4419 | |
| 10 | G | A | 0.1549 | |
| 11 | L | A | 0.9984 | |
| 12 | V | A | 0.0340 | |
| 13 | Q | A | -1.2304 | |
| 14 | P | A | -1.4092 | |
| 15 | G | A | -1.2945 | |
| 16 | G | A | -0.8630 | |
| 17 | S | A | -0.6669 | |
| 18 | L | A | -0.0644 | |
| 19 | T | A | -0.2724 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | 0.0247 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | 0.0008 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | 0.0500 | |
| 26 | G | A | 0.0882 | |
| 27 | F | A | 1.1629 | |
| 28 | T | A | -0.1654 | |
| 29 | L | A | 0.0000 | |
| 30 | D | A | -1.7724 | |
| 31 | H | A | -1.7424 | |
| 32 | Y | A | -1.0237 | |
| 33 | D | A | -1.8379 | |
| 34 | I | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -1.4245 | |
| 40 | A | A | -1.6716 | |
| 41 | P | A | -1.4651 | |
| 42 | G | A | -1.7821 | |
| 43 | K | A | -2.8844 | |
| 44 | E | A | -2.5966 | |
| 45 | R | A | 0.0000 | |
| 46 | E | A | -1.4508 | |
| 47 | G | A | 0.0000 | |
| 48 | V | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | C | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | N | A | 0.0000 | |
| 53 | N | A | -2.3199 | |
| 54 | S | A | -2.4157 | |
| 55 | D | A | -3.4067 | |
| 56 | D | A | -3.4874 | |
| 57 | D | A | -2.9481 | |
| 58 | T | A | -1.3186 | |
| 59 | Y | A | -1.4017 | |
| 60 | Y | A | -1.4856 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.8570 | |
| 63 | S | A | -1.8322 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.7665 | |
| 66 | G | A | -1.8112 | |
| 67 | R | A | -1.4423 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.4439 | |
| 70 | I | A | 0.0000 | |
| 71 | F | A | 0.2778 | |
| 72 | M | A | -0.6925 | |
| 73 | N | A | -1.5319 | |
| 74 | N | A | -2.0116 | |
| 75 | A | A | -1.4050 | |
| 76 | K | A | -1.8986 | |
| 77 | D | A | -1.0186 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | 0.1484 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -0.3460 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.2741 | |
| 85 | S | A | -1.1380 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -1.8435 | |
| 88 | P | A | -1.7097 | |
| 89 | E | A | -2.2169 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.7969 | |
| 92 | A | A | 0.0000 | |
| 93 | I | A | -0.3176 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.0795 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | E | A | -0.8647 | |
| 99 | A | A | 0.0000 | |
| 100 | R | A | -2.4402 | |
| 101 | G | A | -2.4362 | |
| 102 | C | A | 0.0000 | |
| 103 | K | A | -3.3214 | |
| 104 | R | A | -3.0497 | |
| 105 | G | A | -2.1638 | |
| 106 | R | A | -2.8061 | |
| 107 | Y | A | -1.9793 | |
| 108 | E | A | -2.9943 | |
| 109 | Y | A | 0.0000 | |
| 110 | D | A | -2.1722 | |
| 111 | F | A | 0.0000 | |
| 112 | W | A | -0.7755 | |
| 113 | G | A | -0.6501 | |
| 114 | Q | A | -1.3058 | |
| 115 | G | A | -0.6395 | |
| 116 | T | A | -0.7983 | |
| 117 | Q | A | -1.0939 | |
| 118 | V | A | 0.0000 | |
| 119 | T | A | -0.2056 | |
| 120 | V | A | 0.0000 | |
| 121 | S | A | -0.6992 | |
| 122 | S | A | -0.6130 | |
| 2 | D | B | -3.2595 | |
| 3 | R | B | -3.6149 | |
| 4 | K | B | -3.0267 | |
| 5 | A | B | -2.3772 | |
| 6 | A | B | 0.0000 | |
| 7 | V | B | -1.8260 | |
| 8 | S | B | 0.0000 | |
| 9 | H | B | -2.4738 | |
| 10 | W | B | 0.0000 | |
| 11 | Q | B | -2.3864 |