Project name: query_structure

Status: done

Started: 2026-03-16 23:49:42
Settings
Chain sequence(s) A: KCLAEAADCSPWSGDSCCKPYLCSCIFFYPCSCRPKGW
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:16)
Show buried residues

Minimal score value
-2.0758
Maximal score value
3.8794
Average score
0.0049
Total score value
0.1855

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.5455
2 C A -0.8781
3 L A -0.7715
4 A A -1.1420
5 E A -2.0758
6 A A -0.8969
7 A A -1.0615
8 D A -1.8587
9 C A -0.4611
10 S A -0.4586
11 P A 0.0220
12 W A 0.7945
13 S A -0.0785
14 G A -0.5765
15 D A -1.0885
16 S A -0.7347
17 C A -0.5363
18 C A -0.8303
19 K A -1.6881
20 P A -1.3862
21 Y A -0.5478
22 L A 0.8932
23 C A 0.6604
24 S A 0.0000
25 C A 2.3626
26 I A 3.2658
27 F A 3.8794
28 F A 3.7964
29 Y A 3.1367
30 P A 1.6586
31 C A 1.2691
32 S A 0.0000
33 C A 0.0000
34 R A -0.3558
35 P A -0.9912
36 K A -1.6298
37 G A -0.5389
38 W A 0.5791
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018