Project name: query_structure

Status: done

Started: 2026-03-16 23:33:57
Settings
Chain sequence(s) A: GSSVPTNLEVVAATPTSLLISWDASYSSVYYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAYSYYYYYYSSPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:30)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:30)
Show buried residues

Minimal score value
-2.5544
Maximal score value
3.6443
Average score
-0.1523
Total score value
-14.0076

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.2012
2 S A -0.0844
3 S A 0.8663
4 V A 0.3000
5 P A 0.0000
6 T A -1.3440
7 N A -2.1055
8 L A -1.3855
9 E A -1.6686
10 V A 0.2378
11 V A 1.6017
12 A A 0.9358
13 A A 0.3469
14 T A -0.1563
15 P A -1.1094
16 T A -0.9942
17 S A -0.4886
18 L A 0.0000
19 L A 0.8411
20 I A 0.0000
21 S A -0.7507
22 W A 0.0000
23 D A -2.1024
24 A A -0.7808
25 S A 0.2084
26 Y A 1.0204
27 S A 1.0470
28 S A 1.2399
29 V A 1.8222
30 Y A 2.3013
31 Y A 0.8137
32 Y A 0.0000
33 R A -0.4304
34 I A 0.0000
35 T A -0.5107
36 Y A -0.2903
37 G A 0.0000
38 E A -1.6709
39 T A -1.3485
40 G A -1.3519
41 G A -1.2569
42 N A -1.6652
43 S A -0.8098
44 P A -0.2337
45 V A 0.5026
46 Q A -0.8134
47 E A -1.6304
48 F A -0.6080
49 T A -0.1928
50 V A -0.0837
51 P A -0.2371
52 G A 0.1081
53 S A -0.6838
54 K A -1.6683
55 S A -1.1612
56 T A -0.5765
57 A A 0.0000
58 T A 0.1225
59 I A 0.0000
60 S A -0.6408
61 G A -1.0213
62 L A 0.0000
63 K A -2.3851
64 P A -1.6903
65 G A -1.5036
66 V A -1.5207
67 D A -2.0914
68 Y A 0.0000
69 T A -0.7780
70 I A 0.0000
71 T A 0.0000
72 V A 0.0000
73 Y A 0.3619
74 A A 0.0000
75 Y A 2.1473
76 S A 0.0000
77 Y A 3.4868
78 Y A 3.3720
79 Y A 3.4672
80 Y A 3.6443
81 Y A 2.9729
82 Y A 1.6346
83 S A 0.8241
84 S A 0.1174
85 P A -0.0340
86 I A 0.0783
87 S A -0.4769
88 I A -0.6204
89 N A -1.7144
90 Y A -1.4779
91 R A -2.5544
92 T A -1.5258
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018