Project name: ID8 [mutate: WF16A, NF17C, YF15B, WF19E, IF14D, LF13F]

Status: done

Started: 2025-04-15 15:31:58
Settings
Chain sequence(s) A: SWSEFPDTQTWLLIYWNKW
C: SWSEFPDTQTWLLIYWNKW
B: SWSEFPDTQTWLLIYWNKW
E: SWSEFPDTQTWLLIYWNKW
D: SWSEFPDTQTWLLIYWNKW
F: SWSEFPDTQTWLLIYWNKW
input PDB
Selected Chain(s) A,B,C,D,E,F
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues WF19E,IF14D,WF16A,YF15B,LF13F,NF17C
Energy difference between WT (input) and mutated protein (by FoldX) 3.07964 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:03:07)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:04:35)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:41)
Show buried residues

Minimal score value
-2.1257
Maximal score value
1.975
Average score
-0.1385
Total score value
-15.7859

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A 0.0106
2 W A 1.1279
3 S A -0.1853
4 E A -2.0528
5 F A -0.1384
6 P A -0.0049
7 D A -0.8675
8 T A -0.3040
9 Q A -0.4001
10 T A -0.0575
11 W A 0.2717
12 L A 0.3947
13 L A 0.3694
14 I A 0.0000
15 Y A 1.3153
16 F A 0.0000 mutated: WF16A
17 N A -0.9948
18 K A -1.6027
19 W A 0.8655
1 S B 0.0098
2 W B 1.1278
3 S B -0.1834
4 E B -2.0925
5 F B 0.0000
6 P B -0.0955
7 D B -1.2080
8 T B -0.3898
9 Q B -0.4931
10 T B -0.0720
11 W B 0.1706
12 L B 0.0000
13 L B 0.4793
14 I B 0.0000
15 F B 0.7964 mutated: YF15B
16 W B 0.0000
17 N B -1.5943
18 K B -1.7129
19 W B 0.8610
1 S C 0.0110
2 W C 1.1286
3 S C -0.1761
4 E C -2.1257
5 F C 0.0000
6 P C -0.0772
7 D C -1.1208
8 T C -0.3331
9 Q C -0.2990
10 T C -0.0344
11 W C 0.1938
12 L C 0.0000
13 L C 0.4843
14 I C 0.0000
15 Y C 0.4738
16 W C 0.3911
17 F C 0.6264 mutated: NF17C
18 K C -1.2965
19 W C 0.8623
1 S D 0.0114
2 W D 1.1268
3 S D -0.3547
4 E D -2.1195
5 F D 0.0000
6 P D -0.0470
7 D D -0.9362
8 T D -0.3049
9 Q D -0.3408
10 T D -0.0736
11 W D 0.1896
12 L D 0.0000
13 L D 0.4793
14 F D 0.0000 mutated: IF14D
15 Y D 1.3153
16 W D 0.0000
17 N D -1.5920
18 K D -1.7109
19 W D 0.8605
1 S E 0.0131
2 W E 1.1281
3 S E -0.1777
4 E E -2.0387
5 F E -0.1375
6 P E -0.0268
7 D E -0.9619
8 T E -0.3333
9 Q E -0.4670
10 T E -0.0732
11 W E 0.2182
12 L E 0.0000
13 L E 0.3452
14 I E 0.0000
15 Y E 1.3153
16 W E 0.0000
17 N E -1.5273
18 K E -1.2089
19 F E 1.6855 mutated: WF19E
1 S F 0.0125
2 W F 1.1264
3 S F -0.1863
4 E F -2.0795
5 F F 0.0000
6 P F -0.1068
7 D F -1.2027
8 T F -0.3950
9 Q F -0.5348
10 T F -0.0853
11 W F 0.1835
12 L F 0.5730
13 F F 1.9750 mutated: LF13F
14 I F 0.0000
15 Y F 0.7338
16 W F 0.0000
17 N F -1.5525
18 K F -1.4725
19 W F 0.9099
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018