Project name: GS linker_4

Status: done

Started: 2026-06-25 07:29:49
Settings
Chain sequence(s) A: GGGGSGGGGSGGGGS
C: GGGGSGGGGSGGGGS
B: GGGGSGGGGSGGGGS
D: GGGGSGGGGSGGGGS
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:02)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:03)
Show buried residues

Minimal score value
-1.7348
Maximal score value
0.0
Average score
-1.3918
Total score value
-83.5083

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.9703
2 G A -1.3703
3 G A -1.4518
4 G A -1.6769
5 S A -1.3915
6 G A -1.3420
7 G A -1.4668
8 G A -1.4895
9 G A -1.3891
10 S A -1.4103
11 G A -1.4318
12 G A -1.5496
13 G A -1.6525
14 G A -1.7028
15 S A -1.2231
1 G B -1.2725
2 G B -1.2805
3 G B -1.4964
4 G B -1.3703
5 S B -1.4665
6 G B -1.3989
7 G B -1.4463
8 G B -1.4540
9 G B -1.3997
10 S B -1.5144
11 G B -1.6744
12 G B -1.7348
13 G B -1.6605
14 G B 0.0000
15 S B -0.9099
1 G C -0.9799
2 G C -1.0375
3 G C -1.1470
4 G C -1.1316
5 S C -1.3214
6 G C -1.3911
7 G C -1.3728
8 G C -1.5009
9 G C -1.5358
10 S C -1.4504
11 G C -1.5716
12 G C -1.6292
13 G C -1.7127
14 G C -1.4278
15 S C -0.9126
1 G D -1.5042
2 G D -1.6462
3 G D -1.7109
4 G D -1.4842
5 S D -1.4536
6 G D -1.4585
7 G D -1.5761
8 G D -1.4706
9 G D -1.5671
10 S D -1.2718
11 G D -1.5504
12 G D -1.5665
13 G D -1.5430
14 G D -1.2451
15 S D -0.7404
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Laboratory of Theory of Biopolymers 2018