Project name: query_structure

Status: done

Started: 2026-03-16 22:47:19
Settings
Chain sequence(s) A: VSSVPTKLEVVAATPTSLLISWDAPAVTVSYYVITYGETGGHYWHWQTFKVPGSKSTATISGLKPGVDYTITVYAYYGQMRYYSPISINYRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:52)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:53)
Show buried residues

Minimal score value
-3.1706
Maximal score value
1.7748
Average score
-0.4978
Total score value
-45.8019

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.7748
2 S A 0.7434
3 S A 0.7581
4 V A 0.3602
5 P A 0.0000
6 T A -1.6573
7 K A -2.6213
8 L A 0.0000
9 E A -1.9170
10 V A 0.1060
11 V A 1.5427
12 A A 0.8960
13 A A 0.3145
14 T A -0.3391
15 P A -1.1156
16 T A -0.9971
17 S A -0.5302
18 L A 0.0000
19 L A 0.7510
20 I A 0.0000
21 S A -0.9608
22 W A 0.0000
23 D A -2.6124
24 A A -1.2333
25 P A 0.0000
26 A A 0.4830
27 V A 0.9287
28 T A 0.4892
29 V A 0.3788
30 S A 0.2840
31 Y A -0.6044
32 Y A 0.0000
33 V A -0.4123
34 I A 0.0000
35 T A 0.0000
36 Y A -0.3407
37 G A 0.0000
38 E A -1.8938
39 T A -1.4839
40 G A -1.0346
41 G A -1.0225
42 H A -0.5563
43 Y A 0.7900
44 W A 0.8333
45 H A -0.5981
46 W A -0.3817
47 Q A -0.9072
48 T A -0.7268
49 F A -0.4862
50 K A -1.3386
51 V A 0.0000
52 P A -1.0806
53 G A -0.7018
54 S A -1.1034
55 K A -2.0533
56 S A -1.4045
57 T A -0.7580
58 A A 0.0000
59 T A 0.2376
60 I A 0.0000
61 S A -0.6610
62 G A -1.0271
63 L A 0.0000
64 K A -2.4986
65 P A -1.8003
66 G A -1.7103
67 V A -1.9319
68 D A -3.1706
69 Y A 0.0000
70 T A -1.1883
71 I A 0.0000
72 T A 0.0000
73 V A 0.0000
74 Y A 0.0298
75 A A 0.0000
76 Y A 0.0128
77 Y A 0.6947
78 G A -0.4081
79 Q A -1.1930
80 M A -0.4903
81 R A -1.0767
82 Y A 0.1710
83 Y A 0.9254
84 S A 0.3384
85 P A 0.1975
86 I A 0.0664
87 S A -0.5284
88 I A -0.7325
89 N A -1.9881
90 Y A -1.8415
91 R A -3.0140
92 T A -1.7757
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018