Project name: Leb-G96A-V85E-L154K

Status: done

Started: 2025-11-19 04:50:54
Settings
Chain sequence(s) H: QVTLREESGPALVKPTQTLTLTCTVSGFSLSAYSVNWIRQPPGKALEWLAMIWGDGKIVYNSALKSRLTISKDTSKNQVVLTMTNMDPVDTATYYCAGDGYYPYAMDNWGQGSLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESK
L: DIVMTQSPDSLSVSLGERATINCRASKSVDSYGNSFMHWYQQKPGQPPKLLIYLASNLESGVPDRFSGSGSGTDFTLTISSLQAEDVAVYYCQQNNEDPRTFGGGTKVEIKRTVAAPSVFIFPPSDEEQLKSGTASVVCLLNNFYPREAKVQQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACCEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) H,L
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:09:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:17)
Show buried residues

Minimal score value
-2.1954
Maximal score value
1.7728
Average score
-0.2811
Total score value
-122.8423

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.1152
2 V H 0.2042
3 T H 0.0536
4 L H 0.0000
5 R H -1.5843
6 E H -0.5383
7 S H -0.2796
8 G H -0.2062
9 P H -0.1399
10 A H 0.0394
11 L H 0.3010
12 V H 0.0000
13 K H -1.7098
14 P H -0.3708
15 T H -0.5062
16 Q H -1.1547
17 T H -0.2643
18 L H 0.0000
19 T H -0.0552
20 L H 0.0000
21 T H 0.0517
22 C H 0.0000
23 T H -0.0538
24 V H 0.0000
25 S H -0.1682
26 G H -0.3198
27 F H 0.4330
28 S H -0.0820
29 L H 0.0000
30 S H -0.2089
31 A H 0.0131
32 Y H 0.0000
33 S H 0.0000
34 V H 0.0000
35 N H 0.0000
36 W H 0.0000
37 I H 0.0000
38 R H 0.0000
39 Q H -0.1468
40 P H -0.1076
41 P H -0.3454
42 G H -0.8195
43 K H -1.7809
44 A H -0.2853
45 L H 0.0000
46 E H -0.4999
47 W H 0.0000
48 L H 0.0000
49 A H 0.0000
50 M H 0.0000
51 I H 0.0000
52 W H 0.1989
53 G H -0.3551
54 D H -1.8494
55 G H -0.9085
56 K H -1.5520
57 I H 0.8000
58 V H 0.0000
59 Y H 0.1811
60 N H -0.1448
61 S H -0.1833
62 A H 0.0579
63 L H -0.1357
64 K H -1.7092
65 S H -0.5800
66 R H -0.3833
67 L H 0.0000
68 T H -0.0549
69 I H 0.0000
70 S H -0.1997
71 K H -0.5228
72 D H -0.7568
73 T H -0.2563
74 S H -0.5329
75 K H -1.7759
76 N H -0.5770
77 Q H -0.3441
78 V H 0.0000
79 V H 0.5170
80 L H 0.0000
81 T H -0.0242
82 M H 0.0000
82A T H -0.2573
82B N H -1.2890
82C M H 0.0000
83 D H -1.1075
84 P H -0.1343
85 V H 1.7286
86 D H 0.0000
87 T H -0.0129
88 A H 0.0000
89 T H 0.0307
90 Y H 0.0000
91 Y H 0.0000
92 C H 0.0000
93 A H 0.0000
94 G H 0.0000
95 D H 0.0000
96 G H 0.1687
97 Y H 1.5377
98 Y H 1.6164
99 P H 0.0000
100 Y H 0.6792
100A A H 0.0000
100B M H 0.0000
101 D H -1.2715
102 N H -0.3968
103 W H 0.0858
104 G H 0.0000
105 Q H -1.2183
106 G H -0.3346
107 S H -0.0050
108 L H 0.2474
109 V H 0.0000
110 T H 0.0000
111 V H 0.0000
112 S H -0.0725
113 S H -0.2125
114 A H -0.0396
115 S H -0.2113
116 T H -0.2268
117 K H -0.9041
118 G H -0.2849
119 P H -0.0658
120 S H -0.0598
121 V H 0.1666
122 F H 0.0000
123 P H -0.0327
124 L H 0.0000
125 A H 0.0000
126 P H 0.0000
127 C H 0.1176
128 S H -0.2937
129 R H -0.6618
130 S H -0.2873
131 T H -0.1381
132 S H -0.3815
133 E H -0.9496
134 S H -0.3776
135 T H -0.1069
136 A H 0.0000
137 A H 0.0000
138 L H 0.0000
139 G H 0.0000
140 C H 0.0000
141 L H 0.0000
142 V H 0.0000
143 K H 0.0000
144 D H -0.3489
145 Y H 0.0000
146 F H 0.0000
147 P H 0.0000
148 E H -0.3700
149 P H -0.2255
150 V H 0.0000
151 T H -0.0335
152 V H 0.1813
153 S H -0.0213
154 W H 0.0000
155 N H -0.3246
156 S H -0.3499
157 G H -0.4944
158 A H 0.0119
159 L H 0.2027
160 T H -0.0716
161 S H -0.2746
162 G H -0.2457
163 V H 0.2883
164 H H -0.0467
165 T H -0.0492
166 F H 0.0000
167 P H -0.2241
168 A H 0.0339
169 V H 0.5835
170 L H 1.3391
171 Q H 0.0670
172 S H -0.2738
173 S H -0.2852
174 G H -0.1788
175 L H 0.2396
176 Y H 0.4341
177 S H 0.0000
178 L H 0.0000
179 S H 0.0000
180 S H 0.0000
181 V H 0.0000
182 V H 0.0000
183 T H -0.0096
184 V H 0.0000
185 P H -0.2756
186 S H -0.1733
187 S H -0.2335
188 S H -0.0039
189 L H 0.2501
190 G H -0.4169
191 T H -0.4446
192 K H -1.6748
193 T H -0.3310
194 Y H 0.0000
195 T H -0.3076
196 C H 0.0000
197 N H -0.3850
198 V H 0.0000
199 D H -0.6424
200 H H 0.0000
201 K H -1.8639
202 P H -0.3524
203 S H -0.2977
204 N H -1.4969
205 T H -0.5508
206 K H -1.6904
207 V H -0.2716
208 D H -1.7879
209 K H -0.9174
210 R H -1.8919
211 V H 0.0000
212 E H -1.8297
213 S H -0.6847
214 K H -1.7094
1 D L -1.7894
2 I L 0.0000
3 V L 1.7728
4 M L 0.0000
5 T L -0.0576
6 Q L 0.0000
7 S L -0.2615
8 P L -0.5539
9 D L -1.8475
10 S L -0.4745
11 L L 0.1214
12 S L -0.1531
13 V L 0.1566
14 S L 0.0627
15 L L 1.4543
16 G L -0.4069
17 E L -1.9072
18 R L -2.1301
19 A L 0.0000
20 T L -0.0729
21 I L 0.0000
22 N L -0.9189
23 C L 0.0000
24 R L -1.7318
25 A L 0.0000
26 S L -0.4752
27 K L -1.7694
27A S L -0.5312
27B V L 0.0000
27C D L -0.5771
27D S L 0.0438
28 Y L 1.2140
29 G L -0.4189
30 N L -1.1325
31 S L -0.2495
32 F L 0.2007
33 M L 0.0000
34 H L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L 0.0000
39 K L -0.6362
40 P L -0.3797
41 G L -0.6656
42 Q L -0.9968
43 P L -0.2066
44 P L 0.0000
45 K L -1.3588
46 L L 0.0000
47 L L 0.0000
48 I L 0.0000
49 Y L 0.3256
50 L L 0.3099
51 A L 0.0000
52 S L -0.3811
53 N L -0.8020
54 L L 0.4275
55 E L -0.2921
56 S L -0.3654
57 G L -0.5052
58 V L 0.0000
59 P L -0.4320
60 D L -1.8695
61 R L -0.6587
62 F L 0.0000
63 S L -0.1762
64 G L -0.1558
65 S L -0.2922
66 G L -0.4547
67 S L -0.2948
68 G L -0.1370
69 T L -0.2506
70 D L -1.4282
71 F L 0.0000
72 T L -0.1275
73 L L 0.0000
74 T L -0.0253
75 I L 0.0000
76 S L -0.3240
77 S L -0.4961
78 L L 0.0000
79 Q L -0.4466
80 A L -0.3229
81 E L -1.4319
82 D L 0.0000
83 V L 0.0000
84 A L 0.0000
85 V L 0.2678
86 Y L 0.0000
87 Y L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 Q L 0.0000
91 N L -0.2471
92 N L -0.5999
93 E L -2.1954
94 D L -2.1283
95 P L 0.0000
96 R L 0.0000
97 T L 0.0237
98 F L 0.1881
99 G L 0.0000
100 G L -0.4763
101 G L -0.1397
102 T L 0.0000
103 K L -0.2431
104 V L 0.0000
105 E L -0.3266
106 I L 0.0000
107 K L -1.2848
108 R L -0.7619
109 T L 0.1047
110 V L 1.4658
111 A L 0.2823
112 A L 0.0022
113 P L 0.0000
114 S L -0.1675
115 V L 0.0000
116 F L 0.0000
117 I L 0.0000
118 F L 0.0000
119 P L 0.0000
120 P L 0.0000
121 S L 0.0000
122 D L -2.0652
123 E L -1.8608
124 Q L 0.0000
125 L L -0.1019
126 K L -1.7014
127 S L -0.5542
128 G L -0.3288
129 T L -0.1458
130 A L 0.0000
131 S L 0.0000
132 V L 0.0000
133 V L 0.0000
134 C L 0.0000
135 L L 0.0000
136 L L 0.0000
137 N L 0.0000
138 N L -0.5089
139 F L 0.0000
140 Y L 0.0000
141 P L -0.3722
142 R L -2.1280
143 E L -2.1424
144 A L -0.6356
145 K L -1.6652
146 V L -0.1800
147 Q L -0.1711
148 W L 0.0000
149 K L -0.1171
150 V L 0.0000
151 D L -1.0878
152 N L -1.4263
153 A L 0.1027
154 L L 1.4746
155 Q L -0.0129
156 S L -0.3442
157 G L -0.7062
158 N L -1.2170
159 S L -0.3306
160 Q L -0.5323
161 E L -1.6519
162 S L -0.2701
163 V L 0.2711
164 T L -0.2340
165 E L -1.5025
166 Q L 0.0000
167 D L -0.6135
168 S L -0.7755
169 K L -1.8413
170 D L -0.9052
171 S L 0.0000
172 T L 0.0000
173 Y L 0.0000
174 S L 0.0000
175 L L 0.0000
176 S L 0.0000
177 S L 0.0000
178 T L -0.0082
179 L L 0.0000
180 T L 0.0134
181 L L 0.1227
182 S L -0.2188
183 K L -0.7070
184 A L -0.3110
185 D L -1.3843
186 Y L 0.0000
187 E L -1.8713
188 K L -2.0467
189 H L -0.9241
190 K L -1.3865
191 V L 0.1068
192 Y L 0.0000
193 A L 0.0000
194 C L 0.0000
195 E L -0.3888
196 V L 0.0000
197 T L -0.0782
198 H L 0.0000
199 Q L -1.2287
200 G L -0.3350
201 L L 0.1805
202 S L -0.2059
203 S L -0.2937
204 P L -0.2068
205 V L 0.3762
206 T L -0.1241
207 K L -0.6385
208 S L -0.2989
209 F L 0.0000
210 N L -0.1326
211 R L -0.6511
212 G L -0.8930
213 E L -1.7726
214 C L 0.3865
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Laboratory of Theory of Biopolymers 2018