| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSCTASGFAFSSYLGWFRQAPGQEREAVAAWFDGTKYYADSVKGRFTISRDNAKNTVTLQMNNLKPEDTAIYYCDRGIGARRGPYYMDVWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:16)
[INFO] Main: Simulation completed successfully. (00:01:17)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4520 | |
| 2 | V | A | -1.0345 | |
| 3 | Q | A | -1.0057 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.9189 | |
| 6 | E | A | 0.0468 | |
| 7 | S | A | -0.6953 | |
| 8 | G | A | -1.2903 | |
| 9 | G | A | -1.2055 | |
| 10 | G | A | -0.9477 | |
| 11 | S | A | -0.7301 | |
| 12 | V | A | -0.8593 | |
| 13 | Q | A | -1.8022 | |
| 14 | A | A | -1.9380 | |
| 15 | G | A | -1.8376 | |
| 16 | G | A | -1.3914 | |
| 17 | S | A | -1.4380 | |
| 18 | L | A | -1.2019 | |
| 19 | R | A | -2.1130 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5388 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -0.1781 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.6537 | |
| 26 | G | A | -0.7960 | |
| 27 | F | A | 0.0139 | |
| 28 | A | A | 0.3862 | |
| 29 | F | A | 0.3946 | |
| 30 | S | A | 0.4567 | |
| 31 | S | A | -0.0577 | |
| 32 | Y | A | 0.4710 | |
| 33 | L | A | 0.0000 | |
| 34 | G | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | F | A | -0.1602 | |
| 37 | R | A | 0.0000 | |
| 38 | Q | A | -1.6721 | |
| 39 | A | A | -1.6959 | |
| 40 | P | A | -1.1720 | |
| 41 | G | A | -1.6609 | |
| 42 | Q | A | -2.7799 | |
| 43 | E | A | -3.2252 | |
| 44 | R | A | -2.4210 | |
| 45 | E | A | -2.0938 | |
| 46 | A | A | -0.4422 | |
| 47 | V | A | 0.0000 | |
| 48 | A | A | 0.0000 | |
| 49 | A | A | 0.3533 | |
| 50 | W | A | -0.1025 | |
| 51 | F | A | -0.3158 | |
| 52 | D | A | -1.8108 | |
| 53 | G | A | -1.3648 | |
| 54 | T | A | -0.7145 | |
| 55 | K | A | -0.4539 | |
| 56 | Y | A | 0.5317 | |
| 57 | Y | A | -0.4207 | |
| 58 | A | A | -1.1506 | |
| 59 | D | A | -2.3409 | |
| 60 | S | A | -1.7331 | |
| 61 | V | A | 0.0000 | |
| 62 | K | A | -2.4489 | |
| 63 | G | A | -1.8611 | |
| 64 | R | A | -1.7597 | |
| 65 | F | A | 0.0000 | |
| 66 | T | A | -0.7726 | |
| 67 | I | A | 0.0000 | |
| 68 | S | A | -0.7293 | |
| 69 | R | A | -1.3800 | |
| 70 | D | A | -1.9012 | |
| 71 | N | A | -2.1061 | |
| 72 | A | A | -1.6002 | |
| 73 | K | A | -2.4095 | |
| 74 | N | A | -1.6384 | |
| 75 | T | A | -1.1236 | |
| 76 | V | A | 0.0000 | |
| 77 | T | A | -0.8105 | |
| 78 | L | A | 0.0000 | |
| 79 | Q | A | -1.1475 | |
| 80 | M | A | 0.0000 | |
| 81 | N | A | -1.8217 | |
| 82 | N | A | -2.2886 | |
| 83 | L | A | 0.0000 | |
| 84 | K | A | -2.6204 | |
| 85 | P | A | -1.9127 | |
| 86 | E | A | -2.3249 | |
| 87 | D | A | 0.0000 | |
| 88 | T | A | -1.1207 | |
| 89 | A | A | 0.0000 | |
| 90 | I | A | -0.3209 | |
| 91 | Y | A | 0.0000 | |
| 92 | Y | A | -0.1018 | |
| 93 | C | A | 0.0000 | |
| 94 | D | A | 0.0000 | |
| 95 | R | A | 0.0000 | |
| 96 | G | A | 0.0000 | |
| 97 | I | A | 1.0423 | |
| 98 | G | A | -0.3131 | |
| 99 | A | A | -0.7607 | |
| 100 | R | A | -2.5136 | |
| 101 | R | A | -2.1910 | |
| 102 | G | A | -1.0687 | |
| 103 | P | A | 0.1344 | |
| 104 | Y | A | 1.3716 | |
| 105 | Y | A | 1.0774 | |
| 106 | M | A | 0.7956 | |
| 107 | D | A | -0.5573 | |
| 108 | V | A | -0.2875 | |
| 109 | W | A | -0.0780 | |
| 110 | G | A | -0.1302 | |
| 111 | Q | A | -0.8591 | |
| 112 | G | A | 0.0000 | |
| 113 | T | A | -0.7175 | |
| 114 | Q | A | -1.2617 | |
| 115 | V | A | 0.0000 | |
| 116 | T | A | -1.0047 | |
| 117 | V | A | 0.0000 | |
| 118 | S | A | -1.2634 | |
| 119 | S | A | -0.9186 |