| Chain sequence(s) |
L: VPLRARNLPPSFFTEP
input PDB |
| Selected Chain(s) | L |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with L chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:15)
[INFO] Main: Simulation completed successfully. (00:00:16)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 205 | V | L | 1.7285 | |
| 206 | P | L | 0.2227 | |
| 207 | L | L | 0.5622 | |
| 208 | R | L | -1.6658 | |
| 209 | A | L | -0.5576 | |
| 210 | R | L | -1.8686 | |
| 211 | N | L | -1.4591 | |
| 212 | L | L | 0.3227 | |
| 213 | P | L | -0.1953 | |
| 214 | P | L | -0.3385 | |
| 215 | S | L | 0.0852 | |
| 216 | F | L | 1.9937 | |
| 217 | F | L | 0.8441 | |
| 218 | T | L | -0.3356 | |
| 219 | E | L | -1.8778 | |
| 220 | P | L | -0.5775 |