| Chain sequence(s) |
A: GCGGLMAGCDGKSTFCCSGYNCSPTWKWCVYARP
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:40)
[INFO] Main: Simulation completed successfully. (00:00:41)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | 0.2636 | |
| 2 | C | A | 0.8323 | |
| 3 | G | A | 0.8101 | |
| 4 | G | A | 1.3422 | |
| 5 | L | A | 2.2391 | |
| 6 | M | A | 1.8219 | |
| 7 | A | A | 0.4546 | |
| 8 | G | A | -0.5416 | |
| 9 | C | A | 0.0000 | |
| 10 | D | A | -2.7509 | |
| 11 | G | A | -2.0588 | |
| 12 | K | A | -2.3333 | |
| 13 | S | A | -1.0241 | |
| 14 | T | A | -0.5974 | |
| 15 | F | A | 1.3518 | |
| 16 | C | A | 0.0000 | |
| 17 | C | A | 0.7240 | |
| 18 | S | A | 0.1081 | |
| 19 | G | A | -0.3499 | |
| 20 | Y | A | 0.5741 | |
| 21 | N | A | -0.5817 | |
| 22 | C | A | 0.0000 | |
| 23 | S | A | -0.8438 | |
| 24 | P | A | -1.4187 | |
| 25 | T | A | -0.3801 | |
| 26 | W | A | 0.1658 | |
| 27 | K | A | -1.8504 | |
| 28 | W | A | -0.4771 | |
| 29 | C | A | 0.0000 | |
| 30 | V | A | 1.2522 | |
| 31 | Y | A | 1.0975 | |
| 32 | A | A | -0.6290 | |
| 33 | R | A | -1.8369 | |
| 34 | P | A | -1.2788 |