Project name: Siltuximab

Status: done

Started: 2026-03-22 13:05:41
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Chain sequence(s) H: EVQLVESGGKLLKPGGSLKLSCAASGFTFSSFAMSWFRQSPEKRLEWVAEISSGGSYTYYPDTVTGRFTISRDNAKNTLYLEMSSLRSEDTAMYYCARGLWGYYALDYWGQGTSVTVSS
L: QIVLIQSPAIMSASPGEKVTMTCSASSSVSYMYWYQQKPGSSPRLLIYDTSNLASGVPVRFSGSGSGTSYSLTISRMEAEDAATYYCQQWSGYPYTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:49)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:51)
Show buried residues

Minimal score value
-3.4938
Maximal score value
2.0859
Average score
-0.3729
Total score value
-83.8975

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9889
2 V H -0.9258
3 Q H -0.7738
4 L H 0.0000
5 V H 1.0050
6 E H 0.0000
7 S H -0.4995
8 G H -1.0225
9 G H -1.0645
11 K H -1.3123
12 L H 0.0528
13 L H -0.7577
14 K H -1.8562
15 P H -1.7296
16 G H -1.3812
17 G H -1.0242
18 S H -1.0072
19 L H 0.0000
20 K H -1.5263
21 L H 0.0000
22 S H -0.2291
23 C H 0.0000
24 A H -0.0659
25 A H 0.0000
26 S H -0.7071
27 G H -1.1751
28 F H -0.4865
29 T H -0.2504
30 F H 0.0000
35 S H -0.8167
36 S H -0.0631
37 F H 0.0000
38 A H 0.0000
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 F H 0.0000
43 R H 0.0000
44 Q H 0.0000
45 S H 0.0000
46 P H -2.0038
47 E H -3.0956
48 K H -3.1611
49 R H -2.5639
50 L H 0.0000
51 E H -0.6268
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 E H 0.0000
56 I H 0.0000
57 S H 0.3352
58 S H -0.1762
59 G H -0.5974
62 G H -0.2947
63 S H 0.1543
64 Y H 1.2627
65 T H 1.0449
66 Y H 1.5303
67 Y H 0.3448
68 P H 0.0000
69 D H -1.9076
70 T H -1.1817
71 V H 0.0000
72 T H -0.7024
74 G H -0.8618
75 R H -0.8586
76 F H 0.0000
77 T H -0.4130
78 I H 0.0000
79 S H -0.2810
80 R H -0.9469
81 D H -1.3803
82 N H -1.5636
83 A H -1.2997
84 K H -2.2373
85 N H -1.7611
86 T H -0.9384
87 L H 0.0000
88 Y H -0.3870
89 L H 0.0000
90 E H -1.2044
91 M H 0.0000
92 S H -0.9925
93 S H -1.0946
94 L H 0.0000
95 R H -2.2067
96 S H -1.9242
97 E H -2.3137
98 D H 0.0000
99 T H -0.8895
100 A H 0.0000
101 M H -0.1905
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 G H 0.0000
108 L H 1.2016
109 W H 1.4674
110 G H 0.7425
112 Y H 1.4135
113 Y H 1.1402
114 A H 0.0000
115 L H 0.0000
116 D H -0.0165
117 Y H 0.4384
118 W H 0.0636
119 G H 0.0000
120 Q H -0.9860
121 G H -0.3337
122 T H 0.0000
123 S H -0.5696
124 V H 0.0000
125 T H -0.6455
126 V H 0.0000
127 S H -0.7995
128 S H -0.7330
1 Q L -0.7240
2 I L 0.7274
3 V L 1.9013
4 L L 0.0000
5 I L 2.0859
6 Q L 0.0000
7 S L 0.3943
8 P L 0.5616
9 A L 0.8098
10 I L 1.5630
11 M L 0.6242
12 S L -0.3398
13 A L 0.0000
14 S L -1.8100
15 P L -2.1488
16 G L -2.5541
17 E L -3.3637
18 K L -3.2834
19 V L 0.0000
20 T L -0.6117
21 M L 0.0000
22 T L 0.0477
23 C L 0.0000
24 S L 0.5381
25 A L 0.0000
26 S L 0.4412
27 S L -0.1863
28 S L -0.4505
29 V L 0.0000
37 S L -0.1153
38 Y L 0.5025
39 M L 0.0000
40 Y L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -0.9591
45 K L -1.4092
46 P L -0.8269
47 G L -0.9400
48 S L -1.0032
49 S L -0.8310
50 P L 0.0000
51 R L -0.9966
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.3797
56 D L 0.0000
57 T L -0.1378
65 S L -0.4411
66 N L -0.5950
67 L L 0.3347
68 A L -0.1062
69 S L -0.4624
70 G L -0.2787
71 V L 0.0000
72 P L 0.6237
74 V L 1.6259
75 R L -0.2249
76 F L 0.0000
77 S L -0.0202
78 G L 0.0000
79 S L -0.5718
80 G L -0.6116
83 S L -0.5470
84 G L -0.5654
85 T L -0.5155
86 S L -0.4153
87 Y L 0.0000
88 S L -0.3572
89 L L 0.0000
90 T L -0.7664
91 I L 0.0000
92 S L -1.9138
93 R L -3.4938
94 M L 0.0000
95 E L -2.5700
96 A L -1.5051
97 E L -2.1622
98 D L 0.0000
99 A L -1.1412
100 A L 0.0000
101 T L -0.6979
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 W L 0.5444
108 S L 0.2301
109 G L 0.0718
114 Y L 0.5681
115 P L 0.0326
116 Y L 0.0000
117 T L 0.2446
118 F L 0.0000
119 G L 0.0000
120 G L -0.5466
121 G L 0.0000
122 T L 0.0000
123 K L -0.4214
124 L L 0.0000
125 E L -0.3998
126 I L -0.5677
127 K L -1.5543
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Laboratory of Theory of Biopolymers 2018