| Chain sequence(s) |
A: FFKGHGF
C: FFKGHGF B: FFKGHGF E: FFKGHGF D: FFKGHGF G: FFKGHGF F: FFKGHGF I: FFKGHGF H: FFKGHGF K: FFKGHGF J: FFKGHGF L: FFKGHGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:07)
[INFO] Main: Simulation completed successfully. (00:02:10)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.7036 | |
| 2 | F | A | 0.7878 | |
| 3 | K | A | -1.6304 | |
| 4 | G | A | -0.9533 | |
| 5 | H | A | -0.4768 | |
| 6 | G | A | 0.6494 | |
| 7 | F | A | 2.0029 | |
| 1 | F | B | 3.9042 | |
| 2 | F | B | 1.9010 | |
| 3 | K | B | -0.6710 | |
| 4 | G | B | -1.0595 | |
| 5 | H | B | -1.0976 | |
| 6 | G | B | 0.3364 | |
| 7 | F | B | 2.0915 | |
| 1 | F | C | 3.9817 | |
| 2 | F | C | 2.1011 | |
| 3 | K | C | -0.9397 | |
| 4 | G | C | -0.9615 | |
| 5 | H | C | -1.4495 | |
| 6 | G | C | -0.3873 | |
| 7 | F | C | 1.6071 | |
| 1 | F | D | 3.6109 | |
| 2 | F | D | 2.2917 | |
| 3 | K | D | -0.4170 | |
| 4 | G | D | -0.2589 | |
| 5 | H | D | -1.1711 | |
| 6 | G | D | -0.4026 | |
| 7 | F | D | 1.4157 | |
| 1 | F | E | 3.9557 | |
| 2 | F | E | 2.1388 | |
| 3 | K | E | -1.0020 | |
| 4 | G | E | -0.6843 | |
| 5 | H | E | -1.3995 | |
| 6 | G | E | -0.2499 | |
| 7 | F | E | 1.4253 | |
| 1 | F | F | 3.4547 | |
| 2 | F | F | 1.5511 | |
| 3 | K | F | -0.7651 | |
| 4 | G | F | -1.0158 | |
| 5 | H | F | -1.2224 | |
| 6 | G | F | -0.3082 | |
| 7 | F | F | 1.4136 | |
| 1 | F | G | 4.6511 | |
| 2 | F | G | 2.3592 | |
| 3 | K | G | -0.6215 | |
| 4 | G | G | -1.0487 | |
| 5 | H | G | -1.6701 | |
| 6 | G | G | -0.2339 | |
| 7 | F | G | 1.4797 | |
| 1 | F | H | 4.6659 | |
| 2 | F | H | 2.8571 | |
| 3 | K | H | -0.0329 | |
| 4 | G | H | -0.1977 | |
| 5 | H | H | -1.6582 | |
| 6 | G | H | -0.1390 | |
| 7 | F | H | 1.6014 | |
| 1 | F | I | 0.0000 | |
| 2 | F | I | 2.8845 | |
| 3 | K | I | 0.3662 | |
| 4 | G | I | -0.9276 | |
| 5 | H | I | -0.9278 | |
| 6 | G | I | 0.2619 | |
| 7 | F | I | 1.7727 | |
| 1 | F | J | 3.5256 | |
| 2 | F | J | 2.1557 | |
| 3 | K | J | -0.7322 | |
| 4 | G | J | -0.4930 | |
| 5 | H | J | -1.1299 | |
| 6 | G | J | -0.4649 | |
| 7 | F | J | 1.4129 | |
| 1 | F | K | 2.4748 | |
| 2 | F | K | 2.0812 | |
| 3 | K | K | -0.8634 | |
| 4 | G | K | -0.7316 | |
| 5 | H | K | -1.1335 | |
| 6 | G | K | -0.3882 | |
| 7 | F | K | 1.3951 | |
| 1 | F | L | 3.6826 | |
| 2 | F | L | 1.9547 | |
| 3 | K | L | -0.6148 | |
| 4 | G | L | -0.6467 | |
| 5 | H | L | -1.1150 | |
| 6 | G | L | -0.5502 | |
| 7 | F | L | 1.2679 |