Project name: GHKGHKG2

Status: done

Started: 2026-02-20 13:10:02
Settings
Chain sequence(s) A: GHKGHKG
B: GHKGHKG
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:17)
Show buried residues

Minimal score value
-3.5739
Maximal score value
-1.5625
Average score
-2.6938
Total score value
-37.7133

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -3.3938
2 H A -3.0962
3 K A -3.5739
4 G A -2.7092
5 H A -2.6742
6 K A -2.7555
7 G A -1.5625
1 G B -2.0623
2 H B -3.0005
3 K B -3.3005
4 G B -2.8689
5 H B -2.5290
6 K B -2.5403
7 G B -1.6465
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Laboratory of Theory of Biopolymers 2018