Project name: query_structure

Status: done

Started: 2026-03-16 22:49:40
Settings
Chain sequence(s) A: VYPCGICTNEVNDDQAILCEASCGKWFHRICTGMTEAYGLTTEASAVWGCDTCMADKD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:02)
Show buried residues

Minimal score value
-3.4796
Maximal score value
1.5727
Average score
-0.6633
Total score value
-38.4715

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.4581
2 Y A 0.8751
3 P A -0.5742
4 C A 0.0000
5 G A -0.3904
6 I A 0.6459
7 C A 0.0568
8 T A -0.5959
9 N A -1.7962
10 E A -2.1495
11 V A -1.6889
12 N A -2.4448
13 D A -3.4796
14 D A -3.2039
15 Q A -2.2501
16 A A -1.0145
17 I A -0.3838
18 L A -0.1378
19 C A 0.0000
20 E A -1.4687
21 A A -0.9991
22 S A -1.1494
23 C A -0.9938
24 G A -1.5425
25 K A -1.5265
26 W A -0.3239
27 F A 0.0000
28 H A -0.5278
29 R A -0.2354
30 I A 1.3200
31 C A 1.1264
32 T A 0.2836
33 G A 0.0932
34 M A 0.2418
35 T A -0.2308
36 E A -1.3076
37 A A -0.0366
38 Y A 0.8024
39 G A 0.7600
40 L A 1.5727
41 T A 0.2818
42 T A -0.6129
43 E A -1.4162
44 A A -0.4811
45 S A -0.1524
46 A A 0.3476
47 V A 1.3598
48 W A 0.7054
49 G A -0.5085
50 C A 0.0000
51 D A -1.9171
52 T A -1.3695
53 C A 0.0000
54 M A -1.6222
55 A A -2.1768
56 D A -3.2615
57 K A -3.4043
58 D A -3.0279
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Laboratory of Theory of Biopolymers 2018