| Chain sequence(s) |
A: VYPCGICTNEVNDDQAILCEASCGKWFHRICTGMTEAYGLTTEASAVWGCDTCMADKD
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:01)
[INFO] Main: Simulation completed successfully. (00:01:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | V | A | 1.4581 | |
| 2 | Y | A | 0.8751 | |
| 3 | P | A | -0.5742 | |
| 4 | C | A | 0.0000 | |
| 5 | G | A | -0.3904 | |
| 6 | I | A | 0.6459 | |
| 7 | C | A | 0.0568 | |
| 8 | T | A | -0.5959 | |
| 9 | N | A | -1.7962 | |
| 10 | E | A | -2.1495 | |
| 11 | V | A | -1.6889 | |
| 12 | N | A | -2.4448 | |
| 13 | D | A | -3.4796 | |
| 14 | D | A | -3.2039 | |
| 15 | Q | A | -2.2501 | |
| 16 | A | A | -1.0145 | |
| 17 | I | A | -0.3838 | |
| 18 | L | A | -0.1378 | |
| 19 | C | A | 0.0000 | |
| 20 | E | A | -1.4687 | |
| 21 | A | A | -0.9991 | |
| 22 | S | A | -1.1494 | |
| 23 | C | A | -0.9938 | |
| 24 | G | A | -1.5425 | |
| 25 | K | A | -1.5265 | |
| 26 | W | A | -0.3239 | |
| 27 | F | A | 0.0000 | |
| 28 | H | A | -0.5278 | |
| 29 | R | A | -0.2354 | |
| 30 | I | A | 1.3200 | |
| 31 | C | A | 1.1264 | |
| 32 | T | A | 0.2836 | |
| 33 | G | A | 0.0932 | |
| 34 | M | A | 0.2418 | |
| 35 | T | A | -0.2308 | |
| 36 | E | A | -1.3076 | |
| 37 | A | A | -0.0366 | |
| 38 | Y | A | 0.8024 | |
| 39 | G | A | 0.7600 | |
| 40 | L | A | 1.5727 | |
| 41 | T | A | 0.2818 | |
| 42 | T | A | -0.6129 | |
| 43 | E | A | -1.4162 | |
| 44 | A | A | -0.4811 | |
| 45 | S | A | -0.1524 | |
| 46 | A | A | 0.3476 | |
| 47 | V | A | 1.3598 | |
| 48 | W | A | 0.7054 | |
| 49 | G | A | -0.5085 | |
| 50 | C | A | 0.0000 | |
| 51 | D | A | -1.9171 | |
| 52 | T | A | -1.3695 | |
| 53 | C | A | 0.0000 | |
| 54 | M | A | -1.6222 | |
| 55 | A | A | -2.1768 | |
| 56 | D | A | -3.2615 | |
| 57 | K | A | -3.4043 | |
| 58 | D | A | -3.0279 |