Project name: RFC11

Status: done

Started: 2025-07-15 15:38:08
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Chain sequence(s) A: KLYVYTIDDDPEAEAKKEKEKAEIDKKKAEAKKVPGATITTRSFSLTTINHKPVKVEVEPPKPGSGAKVTLKTETINGQNVNYKPGDKPKTQKFEVFEYDIKT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:41)
Show buried residues

Minimal score value
-4.5654
Maximal score value
1.0795
Average score
-1.6659
Total score value
-171.5867

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.7800
2 L A -0.7374
3 Y A 0.1473
4 V A 1.0795
5 Y A -0.0013
6 T A -0.6696
7 I A 0.0000
8 D A -2.6204
9 D A -3.2632
10 D A -3.0486
11 P A -2.7167
12 E A -3.4701
13 A A -2.8578
14 E A -3.4284
15 A A -3.2848
16 K A -3.7632
17 K A -3.3856
18 E A -4.4362
19 K A -4.5487
20 E A -4.0954
21 K A -4.1824
22 A A -4.1172
23 E A -4.5654
24 I A 0.0000
25 D A -4.4642
26 K A -4.5433
27 K A -4.0126
28 K A -3.4422
29 A A -3.4248
30 E A -3.9285
31 A A 0.0000
32 K A -3.0734
33 K A -2.8756
34 V A -1.3550
35 P A -0.8664
36 G A -1.0668
37 A A -1.3350
38 T A -0.8239
39 I A -0.5530
40 T A -0.8316
41 T A -1.3291
42 R A -2.1100
43 S A -0.9102
44 F A -0.1651
45 S A -0.1013
46 L A 0.1241
47 T A 0.1497
48 T A 0.3656
49 I A 0.7382
50 N A -1.0080
51 H A -1.5635
52 K A -1.3787
53 P A -1.2060
54 V A -1.0733
55 K A -1.5818
56 V A -0.7136
57 E A -1.7699
58 V A -1.1568
59 E A -2.7129
60 P A -2.1692
61 P A -2.2283
62 K A -2.5199
63 P A -1.4185
64 G A -1.2352
65 S A -1.5671
66 G A -2.0353
67 A A -2.0214
68 K A -2.5532
69 V A -0.8722
70 T A -0.8556
71 L A -0.1815
72 K A -1.4653
73 T A -1.1145
74 E A -1.5374
75 T A -0.7406
76 I A -0.1172
77 N A -1.4770
78 G A -1.4620
79 Q A -1.9779
80 N A -1.7560
81 V A -0.5069
82 N A -1.3378
83 Y A -0.8092
84 K A -2.0475
85 P A -1.6133
86 G A -1.7224
87 D A -2.3796
88 K A -2.5514
89 P A -1.6162
90 K A -1.8931
91 T A -0.9210
92 Q A 0.0000
93 K A -0.9228
94 F A 0.0000
95 E A -0.0807
96 V A 0.0000
97 F A -0.5760
98 E A -1.4546
99 Y A 0.0000
100 D A -1.8879
101 I A -1.3461
102 K A -1.6619
103 T A -1.2085
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Laboratory of Theory of Biopolymers 2018