Project name: A099

Status: done

Started: 2025-06-22 09:45:09
Settings
Chain sequence(s) H: EVKLEESGGGLVQPGGSMKLSCVASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSSTINYTPSLKDKFIISRDNAKNKLYLQMSKVRSEDTALYYCARKGIYYFNYPFAYWGQGTLVTVSA
L: DIVMTQSHKFMSTSVGDRVSVTCKASQNVGTNVAWYQQKPGQSPKALIYSASYRYSGVPDRFTGSGSGTDFTLTISNVQSEDLAEYFCQQYNSYPYTFGGGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:26)
Show buried residues

Minimal score value
-3.4018
Maximal score value
3.2978
Average score
-0.5927
Total score value
-135.1276

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.1728
2 V H -1.3938
3 K H -1.8674
4 L H 0.0000
5 E H -1.4388
6 E H -0.8768
7 S H -0.7113
8 G H -0.6714
9 G H -0.0037
11 G H 0.6131
12 L H 1.2455
13 V H 0.0000
14 Q H -1.6877
15 P H -2.2048
16 G H -2.2672
17 G H -1.7733
18 S H -1.5150
19 M H -0.7708
20 K H -0.9688
21 L H 0.0000
22 S H -0.4611
23 C H 0.0000
24 V H -0.4492
25 A H 0.0000
26 S H -1.4121
27 G H -1.4381
28 F H -1.1771
29 D H -1.5734
30 F H 0.0000
35 S H -1.9544
36 K H -2.0799
37 Y H -0.5519
38 W H 0.0821
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.7504
45 A H 0.0000
46 P H -0.8930
47 G H -1.4485
48 K H -2.2513
49 G H -1.4644
50 L H 0.0000
51 E H -1.1108
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 E H 0.0000
56 I H 0.0000
57 H H -1.0691
58 P H -1.8714
59 D H -2.3740
62 S H -1.2155
63 S H -0.7798
64 T H -0.2684
65 I H 0.2953
66 N H 0.0618
67 Y H -0.3982
68 T H -0.9821
69 P H -1.3004
70 S H -1.1653
71 L H 0.0000
72 K H -2.5535
74 D H -2.9400
75 K H -2.2620
76 F H 0.0000
77 I H 0.0088
78 I H 0.0000
79 S H 0.0056
80 R H -1.1657
81 D H -1.6988
82 N H -2.1756
83 A H -1.4133
84 K H -2.2352
85 N H -1.7874
86 K H -1.1662
87 L H 0.0000
88 Y H -0.0947
89 L H 0.0000
90 Q H -0.4653
91 M H 0.0000
92 S H -1.8272
93 K H -2.9736
94 V H 0.0000
95 R H -3.4018
96 S H -2.2698
97 E H -2.5580
98 D H 0.0000
99 T H -0.6887
100 A H 0.0000
101 L H 0.4911
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 K H 0.0000
108 G H 0.0000
109 I H 2.5794
110 Y H 3.2978
111 Y H 3.2884
112A F H 3.1536
112 N H 0.0000
113 Y H 1.4508
114 P H 0.0000
115 F H 0.0000
116 A H 0.3604
117 Y H 0.2053
118 W H 0.0000
119 G H 0.0000
120 Q H -1.9548
121 G H -0.8380
122 T H -0.1380
123 L H 1.0050
124 V H 0.0000
125 T H 0.0701
126 V H 0.0000
127 S H -0.6110
128 A H -0.3447
1 D L -1.3854
2 I L -0.3820
3 V L 0.9019
4 M L 0.0000
5 T L -0.5555
6 Q L -0.7658
7 S L -0.9902
8 H L -1.0087
9 K L -0.8594
10 F L 0.6306
11 M L 0.1540
12 S L -0.4821
13 T L 0.0000
14 S L -0.9346
15 V L -0.0925
16 G L -1.1868
17 D L -2.0257
18 R L -2.5212
19 V L 0.0000
20 S L -0.5048
21 V L 0.0000
22 T L -0.9132
23 C L 0.0000
24 K L -2.0603
25 A L 0.0000
26 S L -1.0803
27 Q L -2.2052
28 N L -2.4808
29 V L 0.0000
36 G L -1.2779
37 T L -0.9743
38 N L -0.6977
39 V L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.5093
46 P L -1.0053
47 G L -1.3622
48 Q L -1.9720
49 S L -1.3432
50 P L 0.0000
51 K L -1.3485
52 A L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.5664
56 S L 0.3677
57 A L 0.0000
65 S L 0.1436
66 Y L 0.8757
67 R L -0.5628
68 Y L -0.1196
69 S L -0.3897
70 G L -0.8304
71 V L -0.8495
72 P L -1.2497
74 D L -2.1664
75 R L -1.7892
76 F L 0.0000
77 T L -0.5391
78 G L 0.0000
79 S L -0.4599
80 G L -1.0637
83 S L -1.1698
84 G L -1.6705
85 T L -2.1302
86 D L -2.5480
87 F L 0.0000
88 T L -0.7236
89 L L 0.0000
90 T L -0.5544
91 I L 0.0000
92 S L -2.0453
93 N L -2.1064
94 V L 0.0000
95 Q L -0.9771
96 S L -0.9783
97 E L -1.6572
98 D L 0.0000
99 L L -0.5441
100 A L 0.0000
101 E L -0.8335
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 N L -1.0057
109 S L -0.4680
114 Y L 0.0058
115 P L -0.3678
116 Y L 0.0000
117 T L -0.0739
118 F L 0.0000
119 G L 0.0000
120 G L -1.0720
121 G L 0.0000
122 T L 0.0000
123 K L -0.5603
124 L L 0.0000
125 E L -0.8573
126 I L -0.8308
127 K L -1.5416
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Laboratory of Theory of Biopolymers 2018