Project name: a1d8ad3ed3c6280

Status: done

Started: 2025-06-03 05:12:51
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGFTLTNYGMNWVRQARGQRLEWIGWINTDTGEPTYADDFKGRFVFSLDTSVSTAYLQISSLKAEDTAVYYCARNPPYYYGTNNAEAMDYWGQGTTVTVSS
L: DIQMTQSPSSLSASVGDRVTITCSSSQDISNYLNWYLQKPGQSPQLLIYYTSTLHLGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYYNLPWTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:57)
Show buried residues

Minimal score value
-3.2992
Maximal score value
2.1527
Average score
-0.4932
Total score value
-114.4165

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4819
2 V H -0.8524
3 Q H -1.1733
4 L H 0.0000
5 V H 0.4162
6 Q H 0.0000
7 S H -0.4513
8 G H -0.5753
9 A H -0.0002
11 E H 0.1078
12 V H 0.9400
13 K H -0.8370
14 K H -2.0562
15 P H -1.9680
16 G H -1.4233
17 A H -1.1985
18 S H -1.1814
19 V H 0.0000
20 K H -1.2154
21 V H 0.0000
22 S H -0.3513
23 C H 0.0000
24 K H -0.3716
25 A H 0.0000
26 S H -0.6508
27 G H -0.9943
28 F H -0.5755
29 T H -0.4123
30 L H 0.0000
35 T H -1.3431
36 N H -1.1505
37 Y H -0.6465
38 G H 0.0000
39 M H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H -0.7173
44 Q H -1.2643
45 A H 0.0000
46 R H -2.6692
47 G H -2.0781
48 Q H -2.4518
49 R H -1.8482
50 L H 0.0000
51 E H -1.0888
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 W H -0.2315
56 I H 0.0000
57 N H -1.7436
58 T H 0.0000
59 D H -2.4348
62 T H -1.6719
63 G H -1.7246
64 E H -2.2953
65 P H -0.8431
66 T H -0.6026
67 Y H -0.9837
68 A H 0.0000
69 D H -3.2992
70 D H -3.2724
71 F H 0.0000
72 K H -2.9318
74 G H -1.8063
75 R H -1.2253
76 F H 0.0000
77 V H 0.3805
78 F H 0.0000
79 S H -0.2441
80 L H -0.5228
81 D H -0.4643
82 T H -0.5389
83 S H 0.0443
84 V H 0.5337
85 S H -0.0416
86 T H 0.0000
87 A H 0.0000
88 Y H -0.0977
89 L H 0.0000
90 Q H -0.5877
91 I H 0.0000
92 S H -0.8002
93 S H -1.1339
94 L H 0.0000
95 K H -2.2882
96 A H -1.8046
97 E H -2.3829
98 D H 0.0000
99 T H -1.0266
100 A H 0.0000
101 V H -0.2943
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 N H 0.0000
108 P H 0.1548
109 P H 0.5450
110 Y H 1.6668
111 Y H 2.1527
111A Y H 1.8408
111B G H 0.3222
112C T H -0.0916
112B N H -1.0726
112A N H -0.8493
112 A H -0.5293
113 E H -0.3183
114 A H 0.0000
115 M H 0.0000
116 D H 0.1165
117 Y H 0.1211
118 W H -0.0722
119 G H 0.0000
120 Q H -1.2493
121 G H -0.5965
122 T H 0.0000
123 T H -0.1957
124 V H 0.0000
125 T H -0.1690
126 V H 0.0000
127 S H -0.8100
128 S H -0.8507
1 D L -2.2521
2 I L 0.0000
3 Q L -1.7512
4 M L 0.0000
5 T L -0.7527
6 Q L 0.0000
7 S L -0.3926
8 P L -0.5376
9 S L -0.6982
10 S L -0.9174
11 L L -0.5062
12 S L -0.6814
13 A L 0.0000
14 S L -0.0403
15 V L 0.8618
16 G L -0.3777
17 D L -1.3950
18 R L -2.0922
19 V L 0.0000
20 T L -0.5797
21 I L 0.0000
22 T L -0.5791
23 C L 0.0000
24 S L -1.4031
25 S L 0.0000
26 S L -1.6574
27 Q L -2.0156
28 D L -2.3046
29 I L 0.0000
36 S L -0.6275
37 N L -0.4215
38 Y L 0.3556
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 L L 0.0000
44 Q L -1.0571
45 K L -1.4482
46 P L -1.0037
47 G L -1.3790
48 Q L -1.9753
49 S L -1.2665
50 P L 0.0000
51 Q L -0.9934
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.6136
56 Y L 0.8084
57 T L 0.0000
65 S L 0.0205
66 T L 0.4944
67 L L 0.7027
68 H L 0.6269
69 L L 1.3505
70 G L 0.3409
71 V L 0.2364
72 P L -0.1020
74 S L -0.4156
75 R L -0.8199
76 F L 0.0000
77 S L -0.3296
78 G L -0.1455
79 S L -0.6816
80 G L -1.0669
83 S L -1.2268
84 G L -1.6172
85 T L -1.9075
86 E L -2.4071
87 F L 0.0000
88 T L -0.6472
89 L L 0.0000
90 T L 0.0000
91 I L 0.0000
92 S L -1.3158
93 S L -0.9946
94 L L 0.0000
95 Q L -0.5834
96 P L -0.5843
97 D L -1.8417
98 D L 0.0000
99 F L -0.3945
100 A L 0.0000
101 T L -0.8229
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 Y L 0.2695
109 N L -0.3171
114 L L 0.3280
115 P L -0.4755
116 W L 0.0000
117 T L -0.6207
118 F L 0.0000
119 G L 0.0000
120 Q L -1.1776
121 G L 0.0000
122 T L 0.0000
123 K L -1.2443
124 V L 0.0000
125 E L -0.7742
126 I L 0.7991
127 K L -0.8212
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Laboratory of Theory of Biopolymers 2018