| Chain sequence(s) |
A: APVPVTKLVCDGDTYKCTAYLDYGDGKWVAQWDTAVFHTT
C: APVPVTKLVCDGDTYKCTAYLDYGDGKWVAQWDTAVFHTT B: APVPVTKLVCDGDTYKCTAYLDYGDGKWVAQWDTAVFHTT input PDB |
| Selected Chain(s) | A,C,B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:07)
[INFO] Main: Simulation completed successfully. (00:01:08)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | A | -0.2663 | |
| 2 | P | A | -0.5212 | |
| 3 | V | A | -0.1044 | |
| 4 | P | A | -0.6980 | |
| 5 | V | A | -0.5958 | |
| 6 | T | A | -1.0137 | |
| 7 | K | A | -1.5636 | |
| 8 | L | A | -0.3037 | |
| 9 | V | A | -0.3872 | |
| 10 | C | A | 0.0000 | |
| 11 | D | A | -0.8958 | |
| 12 | G | A | -0.7383 | |
| 13 | D | A | -1.8425 | |
| 14 | T | A | -1.1730 | |
| 15 | Y | A | -0.6498 | |
| 16 | K | A | -1.6054 | |
| 17 | C | A | 0.0000 | |
| 18 | T | A | -0.4515 | |
| 19 | A | A | 0.0000 | |
| 20 | Y | A | -0.3432 | |
| 21 | L | A | 0.0000 | |
| 22 | D | A | -1.9075 | |
| 23 | Y | A | -0.3385 | |
| 24 | G | A | -1.3295 | |
| 25 | D | A | -2.4041 | |
| 26 | G | A | -1.8453 | |
| 27 | K | A | -1.6818 | |
| 28 | W | A | -0.5161 | |
| 29 | V | A | 0.0000 | |
| 30 | A | A | 0.0000 | |
| 31 | Q | A | -0.5117 | |
| 32 | W | A | -1.2234 | |
| 33 | D | A | -1.8574 | |
| 34 | T | A | 0.0000 | |
| 35 | A | A | -0.1778 | |
| 36 | V | A | 0.1339 | |
| 37 | F | A | 0.5675 | |
| 38 | H | A | -0.6552 | |
| 39 | T | A | -0.5147 | |
| 40 | T | A | -0.4566 | |
| 1 | A | B | -0.2876 | |
| 2 | P | B | -0.5689 | |
| 3 | V | B | -0.1703 | |
| 4 | P | B | -0.6643 | |
| 5 | V | B | -0.5672 | |
| 6 | T | B | -1.0348 | |
| 7 | K | B | -1.5711 | |
| 8 | L | B | -0.3285 | |
| 9 | V | B | -0.4312 | |
| 10 | C | B | 0.0000 | |
| 11 | D | B | -0.9597 | |
| 12 | G | B | -0.8071 | |
| 13 | D | B | -1.8825 | |
| 14 | T | B | -1.2394 | |
| 15 | Y | B | -0.7882 | |
| 16 | K | B | -1.6634 | |
| 17 | C | B | 0.0000 | |
| 18 | T | B | -0.4779 | |
| 19 | A | B | 0.0000 | |
| 20 | Y | B | -0.4626 | |
| 21 | L | B | 0.0000 | |
| 22 | D | B | -2.0196 | |
| 23 | Y | B | -0.4354 | |
| 24 | G | B | -1.4313 | |
| 25 | D | B | -2.5598 | |
| 26 | G | B | -2.1135 | |
| 27 | K | B | -2.2500 | |
| 28 | W | B | -0.8461 | |
| 29 | V | B | 0.0000 | |
| 30 | A | B | 0.0000 | |
| 31 | Q | B | -0.5181 | |
| 32 | W | B | -1.2396 | |
| 33 | D | B | -1.8973 | |
| 34 | T | B | 0.0000 | |
| 35 | A | B | -0.2150 | |
| 36 | V | B | 0.0970 | |
| 37 | F | B | 0.5307 | |
| 38 | H | B | -0.6889 | |
| 39 | T | B | -0.5329 | |
| 40 | T | B | -0.4660 | |
| 1 | A | C | -0.2461 | |
| 2 | P | C | -0.4806 | |
| 3 | V | C | -0.0253 | |
| 4 | P | C | -0.5781 | |
| 5 | V | C | -0.3854 | |
| 6 | T | C | -0.7229 | |
| 7 | K | C | -1.0371 | |
| 8 | L | C | -0.1514 | |
| 9 | V | C | 0.0000 | |
| 10 | C | C | 0.0000 | |
| 11 | D | C | -0.9057 | |
| 12 | G | C | -0.7274 | |
| 13 | D | C | -1.8124 | |
| 14 | T | C | -1.1175 | |
| 15 | Y | C | -0.5681 | |
| 16 | K | C | -1.4969 | |
| 17 | C | C | 0.0000 | |
| 18 | T | C | -0.4246 | |
| 19 | A | C | 0.0000 | |
| 20 | Y | C | -0.1775 | |
| 21 | L | C | 0.0000 | |
| 22 | D | C | -1.8164 | |
| 23 | Y | C | -0.3213 | |
| 24 | G | C | -1.3250 | |
| 25 | D | C | -2.4103 | |
| 26 | G | C | -1.8571 | |
| 27 | K | C | -1.6720 | |
| 28 | W | C | -0.4951 | |
| 29 | V | C | 0.0000 | |
| 30 | A | C | 0.0000 | |
| 31 | Q | C | -0.4853 | |
| 32 | W | C | -1.1800 | |
| 33 | D | C | -1.7968 | |
| 34 | T | C | 0.0000 | |
| 35 | A | C | -0.1697 | |
| 36 | V | C | 0.0940 | |
| 37 | F | C | 0.3729 | |
| 38 | H | C | -0.9045 | |
| 39 | T | C | -0.7279 | |
| 40 | T | C | -0.5806 |