| Chain sequence(s) |
H: EVQLVQSGAEVKKPGASVKVSCKASGYTFTSYTIHWVRQAPGQGLEWMGYINPSSGYTNYNQKFKDKATMTRDTSTSTVYMELSSLRSEDTAVYYCARGGLGWAYWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQEISGYLSWLQQKPGGAIKRLIYAASTLDSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCLQYASYPLTFGQGTKLEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:40)
[INFO] Main: Simulation completed successfully. (00:01:42)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -1.9944 | |
| 2 | V | H | -0.9726 | |
| 3 | Q | H | -0.9008 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.8557 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.3620 | |
| 8 | G | H | -0.3879 | |
| 9 | A | H | 0.3096 | |
| 11 | E | H | 0.1791 | |
| 12 | V | H | 1.0858 | |
| 13 | K | H | -0.9185 | |
| 14 | K | H | -2.2332 | |
| 15 | P | H | -2.2016 | |
| 16 | G | H | -1.6565 | |
| 17 | A | H | -1.2923 | |
| 18 | S | H | -1.3430 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.7631 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.4768 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.6813 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.7423 | |
| 27 | G | H | -1.1023 | |
| 28 | Y | H | -0.3819 | |
| 29 | T | H | -0.0265 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.2499 | |
| 36 | S | H | -0.0653 | |
| 37 | Y | H | 0.2603 | |
| 38 | T | H | 0.0772 | |
| 39 | I | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.4422 | |
| 45 | A | H | -0.8454 | |
| 46 | P | H | -1.0026 | |
| 47 | G | H | -1.2098 | |
| 48 | Q | H | -1.8489 | |
| 49 | G | H | -1.3371 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.5833 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | Y | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -0.0585 | |
| 58 | P | H | 0.0000 | |
| 59 | S | H | -0.2742 | |
| 62 | S | H | -0.0732 | |
| 63 | G | H | 0.0383 | |
| 64 | Y | H | 0.9399 | |
| 65 | T | H | 0.3814 | |
| 66 | N | H | -0.1229 | |
| 67 | Y | H | -1.1324 | |
| 68 | N | H | -1.8334 | |
| 69 | Q | H | -2.8230 | |
| 70 | K | H | -3.0997 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.5050 | |
| 74 | D | H | -3.2226 | |
| 75 | K | H | -2.2080 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -1.0964 | |
| 78 | M | H | 0.0000 | |
| 79 | T | H | -0.4277 | |
| 80 | R | H | -0.7975 | |
| 81 | D | H | -0.9625 | |
| 82 | T | H | -0.5947 | |
| 83 | S | H | -0.4882 | |
| 84 | T | H | -0.5900 | |
| 85 | S | H | -0.6913 | |
| 86 | T | H | 0.0000 | |
| 87 | V | H | 0.0000 | |
| 88 | Y | H | -0.6368 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.2270 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.3302 | |
| 93 | S | H | -1.4424 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -3.1579 | |
| 96 | S | H | -2.3736 | |
| 97 | E | H | -2.4581 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.6553 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.6618 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.1390 | |
| 107 | G | H | 0.0000 | |
| 108 | G | H | 0.2175 | |
| 109 | L | H | 1.1037 | |
| 114 | G | H | 0.0000 | |
| 115 | W | H | 0.0000 | |
| 116 | A | H | 0.2563 | |
| 117 | Y | H | 0.3051 | |
| 118 | W | H | 0.1052 | |
| 119 | G | H | -0.2007 | |
| 120 | Q | H | -0.8311 | |
| 121 | G | H | -0.0909 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 1.0183 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.0843 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.9964 | |
| 128 | S | H | -1.2251 | |
| 1 | D | L | -2.0227 | |
| 2 | I | L | -1.7470 | |
| 3 | Q | L | -2.2546 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.3964 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.7400 | |
| 8 | P | L | -0.5962 | |
| 9 | S | L | -0.8952 | |
| 10 | S | L | -1.0166 | |
| 11 | L | L | -0.5348 | |
| 12 | S | L | -0.8173 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.1707 | |
| 15 | V | L | 0.7424 | |
| 16 | G | L | -0.4345 | |
| 17 | D | L | -1.4053 | |
| 18 | R | L | -2.1192 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.5469 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.7847 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.8244 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -2.2124 | |
| 27 | Q | L | -2.8690 | |
| 28 | E | L | -2.6941 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.7813 | |
| 37 | G | L | -0.1731 | |
| 38 | Y | L | 0.9300 | |
| 39 | L | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | L | L | 0.0000 | |
| 43 | Q | L | -0.6660 | |
| 44 | Q | L | -0.8526 | |
| 45 | K | L | -1.2095 | |
| 46 | P | L | -0.7760 | |
| 47 | G | L | -0.9412 | |
| 48 | G | L | -0.7433 | |
| 49 | A | L | -0.8027 | |
| 50 | I | L | -0.5926 | |
| 51 | K | L | -0.7614 | |
| 52 | R | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.7180 | |
| 56 | A | L | 0.4996 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.2441 | |
| 66 | T | L | 0.1132 | |
| 67 | L | L | 0.3400 | |
| 68 | D | L | 0.0000 | |
| 69 | S | L | -0.3233 | |
| 70 | G | L | -0.5471 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -0.4144 | |
| 74 | S | L | -0.4354 | |
| 75 | R | L | -0.8395 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.3498 | |
| 78 | G | L | -0.4099 | |
| 79 | S | L | -0.9188 | |
| 80 | R | L | -1.6723 | |
| 83 | S | L | -1.2820 | |
| 84 | G | L | -1.6502 | |
| 85 | T | L | -2.0871 | |
| 86 | D | L | -1.8972 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.8122 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6375 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.3789 | |
| 93 | S | L | -1.0252 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.5564 | |
| 96 | P | L | -0.8029 | |
| 97 | E | L | -1.9172 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.7459 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -1.0380 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.8358 | |
| 108 | A | L | 0.3011 | |
| 109 | S | L | 0.1248 | |
| 114 | Y | L | 0.5174 | |
| 115 | P | L | -0.3078 | |
| 116 | L | L | 0.0000 | |
| 117 | T | L | -0.5829 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.7785 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.8822 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -1.3467 | |
| 126 | I | L | 0.6388 | |
| 127 | K | L | -0.9134 |