| Chain sequence(s) |
A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVYTSWYSPYIYWGQGTQVTVSSLE
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:44)
[INFO] Main: Simulation completed successfully. (00:01:45)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.3532 | |
| 2 | V | A | -0.6364 | |
| 3 | Q | A | -1.7366 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.7183 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.0694 | |
| 8 | G | A | -0.9724 | |
| 9 | G | A | -0.7930 | |
| 10 | G | A | -0.0497 | |
| 11 | L | A | 1.0601 | |
| 12 | V | A | 0.2208 | |
| 13 | Q | A | -1.2237 | |
| 14 | A | A | -1.3935 | |
| 15 | G | A | -1.3063 | |
| 16 | G | A | -0.8519 | |
| 17 | S | A | -1.1785 | |
| 18 | L | A | -1.0111 | |
| 19 | R | A | -2.1066 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.8429 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -1.1818 | |
| 24 | A | A | -0.8005 | |
| 25 | S | A | -1.0264 | |
| 26 | G | A | -0.2199 | |
| 27 | Y | A | 0.4765 | |
| 28 | I | A | 0.0000 | |
| 29 | S | A | -1.2678 | |
| 30 | D | A | -1.7187 | |
| 31 | A | A | 0.0000 | |
| 32 | Y | A | 0.0323 | |
| 33 | Y | A | 0.1980 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.1371 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -2.0123 | |
| 40 | A | A | -1.9125 | |
| 41 | P | A | -1.3285 | |
| 42 | G | A | -1.7898 | |
| 43 | K | A | -2.9197 | |
| 44 | E | A | -3.3798 | |
| 45 | R | A | -2.7550 | |
| 46 | E | A | -1.3367 | |
| 47 | F | A | 0.1316 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | T | A | 0.3539 | |
| 51 | I | A | 0.0000 | |
| 52 | T | A | 0.0000 | |
| 53 | H | A | -1.7464 | |
| 54 | G | A | -1.1842 | |
| 55 | T | A | -1.1220 | |
| 56 | N | A | -1.3179 | |
| 57 | T | A | -0.1057 | |
| 58 | Y | A | 0.8002 | |
| 59 | Y | A | 0.0020 | |
| 60 | A | A | -0.8286 | |
| 61 | D | A | -2.2056 | |
| 62 | S | A | -1.7200 | |
| 63 | V | A | 0.0000 | |
| 64 | K | A | -2.4110 | |
| 65 | G | A | -1.7390 | |
| 66 | R | A | -1.4124 | |
| 67 | F | A | 0.0000 | |
| 68 | T | A | -0.6853 | |
| 69 | I | A | 0.0000 | |
| 70 | S | A | -0.6043 | |
| 71 | R | A | -1.1612 | |
| 72 | D | A | -1.6040 | |
| 73 | N | A | -1.9037 | |
| 74 | A | A | -1.3997 | |
| 75 | K | A | -2.1076 | |
| 76 | N | A | -1.4089 | |
| 77 | T | A | -1.2707 | |
| 78 | V | A | 0.0000 | |
| 79 | Y | A | -0.5953 | |
| 80 | L | A | 0.0000 | |
| 81 | Q | A | -1.2172 | |
| 82 | M | A | 0.0000 | |
| 83 | N | A | -1.3485 | |
| 84 | S | A | -1.1767 | |
| 85 | L | A | 0.0000 | |
| 86 | K | A | -2.1821 | |
| 87 | P | A | -1.6355 | |
| 88 | E | A | -2.2842 | |
| 89 | D | A | 0.0000 | |
| 90 | T | A | -0.8909 | |
| 91 | A | A | 0.0000 | |
| 92 | V | A | -0.6567 | |
| 93 | Y | A | 0.0000 | |
| 94 | Y | A | -0.4478 | |
| 95 | C | A | 0.0000 | |
| 96 | A | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | Y | A | 1.2355 | |
| 99 | T | A | 0.7906 | |
| 100 | S | A | 1.1406 | |
| 101 | W | A | 2.0058 | |
| 102 | Y | A | 1.8423 | |
| 103 | S | A | 1.1152 | |
| 104 | P | A | 1.4958 | |
| 105 | Y | A | 2.1678 | |
| 106 | I | A | 2.0474 | |
| 107 | Y | A | 1.0694 | |
| 108 | W | A | 0.4702 | |
| 109 | G | A | -0.7223 | |
| 110 | Q | A | -1.5595 | |
| 111 | G | A | -0.9984 | |
| 112 | T | A | 0.0000 | |
| 113 | Q | A | -1.1673 | |
| 114 | V | A | 0.0000 | |
| 115 | T | A | -0.2561 | |
| 116 | V | A | 0.0000 | |
| 117 | S | A | -0.4473 | |
| 118 | S | A | -0.6302 | |
| 119 | L | A | 0.3235 | |
| 120 | E | A | -1.3870 |