Project name: query_structure

Status: done

Started: 2026-03-17 00:26:12
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Chain sequence(s) A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVYTSWYSPYIYWGQGTQVTVSSLE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:45)
Show buried residues

Minimal score value
-3.3798
Maximal score value
2.1678
Average score
-0.5883
Total score value
-70.5917

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3532
2 V A -0.6364
3 Q A -1.7366
4 L A 0.0000
5 Q A -1.7183
6 E A 0.0000
7 S A -1.0694
8 G A -0.9724
9 G A -0.7930
10 G A -0.0497
11 L A 1.0601
12 V A 0.2208
13 Q A -1.2237
14 A A -1.3935
15 G A -1.3063
16 G A -0.8519
17 S A -1.1785
18 L A -1.0111
19 R A -2.1066
20 L A 0.0000
21 S A -0.8429
22 C A 0.0000
23 A A -1.1818
24 A A -0.8005
25 S A -1.0264
26 G A -0.2199
27 Y A 0.4765
28 I A 0.0000
29 S A -1.2678
30 D A -1.7187
31 A A 0.0000
32 Y A 0.0323
33 Y A 0.1980
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 Y A -0.1371
38 R A 0.0000
39 Q A -2.0123
40 A A -1.9125
41 P A -1.3285
42 G A -1.7898
43 K A -2.9197
44 E A -3.3798
45 R A -2.7550
46 E A -1.3367
47 F A 0.1316
48 V A 0.0000
49 A A 0.0000
50 T A 0.3539
51 I A 0.0000
52 T A 0.0000
53 H A -1.7464
54 G A -1.1842
55 T A -1.1220
56 N A -1.3179
57 T A -0.1057
58 Y A 0.8002
59 Y A 0.0020
60 A A -0.8286
61 D A -2.2056
62 S A -1.7200
63 V A 0.0000
64 K A -2.4110
65 G A -1.7390
66 R A -1.4124
67 F A 0.0000
68 T A -0.6853
69 I A 0.0000
70 S A -0.6043
71 R A -1.1612
72 D A -1.6040
73 N A -1.9037
74 A A -1.3997
75 K A -2.1076
76 N A -1.4089
77 T A -1.2707
78 V A 0.0000
79 Y A -0.5953
80 L A 0.0000
81 Q A -1.2172
82 M A 0.0000
83 N A -1.3485
84 S A -1.1767
85 L A 0.0000
86 K A -2.1821
87 P A -1.6355
88 E A -2.2842
89 D A 0.0000
90 T A -0.8909
91 A A 0.0000
92 V A -0.6567
93 Y A 0.0000
94 Y A -0.4478
95 C A 0.0000
96 A A 0.0000
97 V A 0.0000
98 Y A 1.2355
99 T A 0.7906
100 S A 1.1406
101 W A 2.0058
102 Y A 1.8423
103 S A 1.1152
104 P A 1.4958
105 Y A 2.1678
106 I A 2.0474
107 Y A 1.0694
108 W A 0.4702
109 G A -0.7223
110 Q A -1.5595
111 G A -0.9984
112 T A 0.0000
113 Q A -1.1673
114 V A 0.0000
115 T A -0.2561
116 V A 0.0000
117 S A -0.4473
118 S A -0.6302
119 L A 0.3235
120 E A -1.3870
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Laboratory of Theory of Biopolymers 2018