Project name: 5DK3 A

Status: done

Started: 2024-07-11 11:09:09
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Chain sequence(s) A: EIVLTQSPATLSLSPGERATLSCRASKGVSTSGYSYLHWYQQKPGQAPRLLIYLASYLESGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHSRDLPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:34)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:35)
Show buried residues

Minimal score value
-3.3653
Maximal score value
2.0315
Average score
-0.7094
Total score value
-154.6468

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -1.2956
2 I A 0.0000
3 V A 1.0838
4 L A 0.0000
5 T A -0.2850
6 Q A -0.3311
7 S A -0.7025
8 P A -0.4128
9 A A -0.5119
10 T A -0.6469
11 L A -0.4482
12 S A -0.6867
13 L A -1.1221
14 S A -1.5303
15 P A -1.8438
16 G A -1.8452
17 E A -2.5348
18 R A -2.8120
19 A A 0.0000
20 T A -0.6582
21 L A 0.0000
22 S A -0.7873
23 C A 0.0000
24 R A -2.0348
25 A A 0.0000
26 S A -1.1314
27 K A -2.4084
28 G A -1.6573
29 V A 0.0000
30 S A -0.4880
31 T A -0.2545
32 S A -0.2387
33 G A -0.2038
34 Y A 0.3964
35 S A 0.0000
36 Y A 0.0643
37 L A 0.0000
38 H A 0.7650
39 W A 0.0000
40 Y A 0.1786
41 Q A 0.0000
42 Q A -1.2381
43 K A -1.8025
44 P A -1.5114
45 G A -1.4756
46 Q A -1.8289
47 A A -1.0524
48 P A -0.9649
49 R A -1.0273
50 L A 0.0009
51 L A 0.0000
52 I A 0.0000
53 Y A 1.0712
54 L A 0.9339
55 A A 0.0000
56 S A 0.3530
57 Y A 1.0262
58 L A 0.7965
59 E A -0.1867
60 S A -0.4217
61 G A -0.5901
62 V A 0.0000
63 P A -0.3044
64 A A -0.2554
65 R A -0.7834
66 F A 0.0000
67 S A -0.1854
68 G A -0.0089
69 S A -0.6158
70 G A -1.1178
71 S A -0.9156
72 G A -1.1142
73 T A -1.8251
74 D A -2.3374
75 F A 0.0000
76 T A -0.7859
77 L A 0.0000
78 T A -0.6868
79 I A 0.0000
80 S A -1.6917
81 S A -1.8497
82 L A 0.0000
83 E A -2.1845
84 P A -2.2479
85 E A -2.4173
86 D A 0.0000
87 F A -1.5498
88 A A 0.0000
89 V A 0.0000
90 Y A 0.0000
91 Y A 0.1722
92 C A 0.0000
93 Q A 0.0000
94 H A 0.0000
95 S A 0.0183
96 R A -1.3603
97 D A -1.1752
98 L A 0.7512
99 P A 0.6962
100 L A 1.6524
101 T A 1.3565
102 F A 2.0315
103 G A 0.0000
104 G A -0.0763
105 G A -0.4055
106 T A 0.0000
107 K A -1.6474
108 V A 0.0000
109 E A -1.4502
110 I A 0.0000
111 K A -1.1943
112 R A -1.0055
113 T A -0.1187
114 V A 0.1882
115 A A -0.2213
116 A A -0.2421
117 P A 0.0000
118 S A 0.0066
119 V A 0.4607
120 F A 1.4066
121 I A 1.2350
122 F A 1.5125
123 P A 0.3173
124 P A -0.5794
125 S A -1.6980
126 D A -3.1893
127 E A -3.3602
128 Q A -2.4529
129 L A -2.5633
130 K A -3.0192
131 S A -1.9454
132 G A -1.3807
133 T A -1.0406
134 A A 0.0000
135 S A 0.0419
136 V A 0.0000
137 V A 0.7329
138 C A 0.0000
139 L A 0.5890
140 L A 0.0000
141 N A -0.4476
142 N A -1.2056
143 F A 0.0000
144 Y A 0.0000
145 P A -1.7417
146 R A -3.1153
147 E A -3.2462
148 A A -2.2593
149 K A -2.2586
150 V A -1.1321
151 Q A -0.7524
152 W A 0.0000
153 K A -0.7124
154 V A 0.0000
155 D A -1.5844
156 N A -1.3971
157 A A -0.2395
158 L A 0.6882
159 Q A -0.1261
160 S A -0.4191
161 G A -0.9721
162 N A -0.9353
163 S A -1.4341
164 Q A -2.2899
165 E A -2.3452
166 S A -1.3254
167 V A -0.7891
168 T A -1.2431
169 E A -2.3532
170 Q A 0.0000
171 D A -2.4071
172 S A -2.5091
173 K A -2.8168
174 D A -2.1263
175 S A 0.0000
176 T A 0.0000
177 Y A -1.5341
178 S A -0.8987
179 L A 0.0000
180 S A -0.4559
181 S A 0.0000
182 T A -0.6194
183 L A 0.0000
184 T A -0.4016
185 L A -0.7190
186 S A -1.1292
187 K A -2.1437
188 A A -1.8998
189 D A -2.6342
190 Y A 0.0000
191 E A -3.1168
192 K A -3.3653
193 H A -2.5426
194 K A -2.2753
195 V A -0.8125
196 Y A 0.0000
197 A A 0.0000
198 C A 0.0000
199 E A -0.9014
200 V A 0.0000
201 T A -1.1709
202 H A 0.0000
203 Q A -1.6188
204 G A -0.4652
205 L A -0.2472
206 S A -0.4802
207 S A -0.4061
208 P A -0.4844
209 V A -0.0264
210 T A -0.4169
211 K A -0.3789
212 S A -0.2905
213 F A -0.4288
214 N A -1.3225
215 R A -1.8323
216 G A -1.6359
217 E A -2.0082
218 C A -0.3533
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Laboratory of Theory of Biopolymers 2018