| Chain sequence(s) |
A: KGHKGHK
C: KGHKGHK B: KGHKGHK D: KGHKGHK input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:24)
[INFO] Main: Simulation completed successfully. (00:01:25)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -3.4230 | |
| 2 | G | A | -3.1733 | |
| 3 | H | A | -3.2962 | |
| 4 | K | A | -4.0567 | |
| 5 | G | A | 0.0000 | |
| 6 | H | A | -2.9576 | |
| 7 | K | A | -3.2434 | |
| 1 | K | B | -2.9640 | |
| 2 | G | B | -3.1637 | |
| 3 | H | B | -4.2795 | |
| 4 | K | B | -4.5536 | |
| 5 | G | B | -3.9750 | |
| 6 | H | B | -2.9915 | |
| 7 | K | B | -3.3308 | |
| 1 | K | C | -3.5457 | |
| 2 | G | C | -3.1932 | |
| 3 | H | C | -4.2199 | |
| 4 | K | C | -4.4130 | |
| 5 | G | C | -3.6558 | |
| 6 | H | C | -2.8771 | |
| 7 | K | C | -3.2735 | |
| 1 | K | D | -3.7086 | |
| 2 | G | D | -3.3781 | |
| 3 | H | D | -3.8190 | |
| 4 | K | D | -4.2012 | |
| 5 | G | D | 0.0000 | |
| 6 | H | D | -3.0356 | |
| 7 | K | D | -3.5346 |