Project name: a384c0701ca1a61

Status: done

Started: 2026-02-12 14:39:44
Settings
Chain sequence(s) A: KGHKGHK
C: KGHKGHK
B: KGHKGHK
D: KGHKGHK
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:25)
Show buried residues

Minimal score value
-4.5536
Maximal score value
0.0
Average score
-3.2951
Total score value
-92.2636

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -3.4230
2 G A -3.1733
3 H A -3.2962
4 K A -4.0567
5 G A 0.0000
6 H A -2.9576
7 K A -3.2434
1 K B -2.9640
2 G B -3.1637
3 H B -4.2795
4 K B -4.5536
5 G B -3.9750
6 H B -2.9915
7 K B -3.3308
1 K C -3.5457
2 G C -3.1932
3 H C -4.2199
4 K C -4.4130
5 G C -3.6558
6 H C -2.8771
7 K C -3.2735
1 K D -3.7086
2 G D -3.3781
3 H D -3.8190
4 K D -4.2012
5 G D 0.0000
6 H D -3.0356
7 K D -3.5346
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Laboratory of Theory of Biopolymers 2018