Project name: A?42

Status: done

Started: 2026-06-20 07:11:03
Settings
Chain sequence(s) A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
C: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
B: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
E: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
D: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
G: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
F: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
I: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
H: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
K: GYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
J: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
L: GYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:09:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:44)
Show buried residues

Minimal score value
-3.2285
Maximal score value
3.0594
Average score
-0.733
Total score value
-357.7103

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -1.9992
2 A A -1.3781
3 E A -2.0736
4 F A -0.5846
5 R A -2.5908
6 H A -2.5412
7 D A -2.6633
8 S A -1.7406
9 G A -1.1192
10 Y A 0.0035
11 E A -1.2347
12 V A -0.2080
13 H A -1.4023
14 H A -1.2181
15 Q A -2.1742
16 K A -1.5548
17 L A 0.6623
18 V A 1.0572
19 F A 1.8512
20 F A 2.0607
21 A A -0.2505
22 E A -2.3230
23 D A -3.2285
24 V A 0.0000
25 G A -1.8934
26 S A -1.6297
27 N A -1.2894
28 K A -1.5390
29 G A 0.0000
30 A A 0.0000
31 I A 0.2685
32 I A 0.0000
33 G A 0.0000
34 L A 0.6698
35 M A 0.0000
36 V A 0.8858
37 G A 0.0000
38 G A 0.0000
39 V A 0.4390
40 V A 0.4296
41 I A 0.0000
42 A A 0.1576
1 D B -1.9668
2 A B -1.4391
3 E B -2.0429
4 F B -0.6250
5 R B -2.6276
6 H B -2.5417
7 D B -2.6207
8 S B -1.7553
9 G B -0.9251
10 Y B 0.2924
11 E B -0.6938
12 V B 0.8802
13 H B -0.8946
14 H B -2.1919
15 Q B -2.0543
16 K B -0.9861
17 L B 0.9986
18 V B 2.7908
19 F B 3.0594
20 F B 2.5742
21 A B 0.5086
22 E B -1.5517
23 D B -2.1738
24 V B -0.7797
25 G B -1.3347
26 S B -1.3277
27 N B -1.8706
28 K B -1.5857
29 G B -0.7404
30 A B -0.2973
31 I B 0.0000
32 I B 0.5495
33 G B 0.2406
34 L B 1.1355
35 M B 0.0000
36 V B 0.0000
37 G B 0.0000
38 G B 0.6549
39 V B 0.0000
40 V B 0.0000
41 I B 0.0000
42 A B 0.0000
1 D C -1.9688
2 A C -1.3753
3 E C -1.9824
4 F C -0.5723
5 R C -2.5287
6 H C -2.5011
7 D C -2.5968
8 S C -1.7452
9 G C -0.8107
10 Y C 0.4309
11 E C -0.7156
12 V C 0.5117
13 H C -0.8903
14 H C -1.5051
15 Q C -1.7205
16 K C -0.8434
17 L C 0.4083
18 V C 0.0000
19 F C 1.2114
20 F C 0.0000
21 A C 0.0000
22 E C -2.0919
23 D C -2.6246
24 V C -1.2124
25 G C -1.0876
26 S C -0.7997
27 N C -0.1863
28 K C -0.8668
29 G C 0.0000
30 A C 0.0000
31 I C 0.0000
32 I C 0.5321
33 G C 0.0000
34 L C 0.7787
35 M C 0.0000
36 V C 0.0000
37 G C 0.0000
38 G C 0.0000
39 V C 0.5034
40 V C 0.1013
41 I C 0.0000
42 A C 0.1510
1 D D -2.0165
2 A D -1.4059
3 E D -2.0840
4 F D -0.5913
5 R D -2.5999
6 H D -2.5387
7 D D -2.6833
8 S D -1.7481
9 G D -1.0012
10 Y D 0.2513
11 E D -0.9187
12 V D 0.2742
13 H D -1.4341
14 H D -2.3460
15 Q D -2.3242
16 K D -1.8332
17 L D 0.0210
18 V D 0.9670
19 F D 1.4824
20 F D 1.4278
21 A D 0.0000
22 E D -2.2520
23 D D -2.6992
24 V D -1.4658
25 G D -1.6402
26 S D -1.5312
27 N D -1.4816
28 K D -1.4429
29 G D 0.0000
30 A D 0.0000
31 I D 0.0000
32 I D 0.6556
33 G D 0.0000
34 L D 0.0000
35 M D 0.8347
36 V D 0.0000
37 G D 0.0000
38 G D 0.0000
39 V D 0.5418
40 V D 0.0000
41 I D 0.4472
42 A D 0.3074
1 D E -2.0227
2 A E -1.4185
3 E E -2.0920
4 F E -0.5960
5 R E -2.5693
6 H E -2.5346
7 D E -2.7761
8 S E -2.4897
9 G E -1.5021
10 Y E -0.5213
11 E E -1.1497
12 V E -0.1683
13 H E -1.8272
14 H E -1.8581
15 Q E -2.3517
16 K E -2.1463
17 L E -0.6153
18 V E 0.1534
19 F E 0.9935
20 F E 1.4069
21 A E -0.4929
22 E E -2.0075
23 D E -2.5532
24 V E -1.7399
25 G E -1.8567
26 S E -1.7526
27 N E -1.8016
28 K E -1.3136
29 G E 0.0000
30 A E -0.3566
31 I E 0.1800
32 I E 0.0000
33 G E 0.0000
34 L E 1.0578
35 M E 0.0000
36 V E 0.0000
37 G E 0.0000
38 G E 0.5428
39 V E 0.0000
40 V E 0.3878
41 I E 0.6174
42 A E -0.0029
1 D F -2.0310
2 A F -1.3469
3 E F -2.1086
4 F F -0.5622
5 R F -2.6104
6 H F -2.5323
7 D F -2.6623
8 S F -2.0715
9 G F -1.2629
10 Y F 0.0025
11 E F -0.7088
12 V F 0.4771
13 H F -1.3967
14 H F -2.0432
15 Q F -2.6974
16 K F -2.4029
17 L F -1.0018
18 V F -0.3568
19 F F 0.0000
20 F F 0.1927
21 A F 0.0000
22 E F -2.5458
23 D F -2.7728
24 V F -1.6636
25 G F -1.4768
26 S F -0.6851
27 N F -0.4719
28 K F -0.8809
29 G F 0.0000
30 A F 0.0000
31 I F 0.0000
32 I F 0.0000
33 G F 0.0000
34 L F 0.8105
35 M F 0.0000
36 V F 0.0000
37 G F 0.0000
38 G F 0.0000
39 V F 0.2523
40 V F 0.0000
41 I F -0.1773
42 A F -0.8622
1 D G -1.9594
2 A G -1.3960
3 E G -1.9820
4 F G -0.5558
5 R G -2.5019
6 H G -2.4763
7 D G -2.6778
8 S G -2.1917
9 G G -1.2941
10 Y G -0.3024
11 E G -1.0728
12 V G 0.0526
13 H G -1.4518
14 H G -1.9102
15 Q G -2.0909
16 K G -1.7422
17 L G -0.4956
18 V G 0.0000
19 F G 0.0000
20 F G 0.1019
21 A G 0.0000
22 E G -2.3952
23 D G -2.8876
24 V G -1.8139
25 G G -1.5844
26 S G -1.1402
27 N G -0.6711
28 K G -1.0480
29 G G 0.0000
30 A G 0.0000
31 I G 0.0000
32 I G 0.0000
33 G G 0.0000
34 L G 0.6923
35 M G 0.0000
36 V G 0.0000
37 G G 0.0000
38 G G 0.0000
39 V G 0.4818
40 V G 0.3118
41 I G 0.5822
42 A G 0.1734
1 D H -1.9906
2 A H -1.4140
3 E H -2.0305
4 F H -0.5925
5 R H -2.5073
6 H H -2.4736
7 D H -2.7074
8 S H -2.3254
9 G H -1.5963
10 Y H -0.7281
11 E H -1.3602
12 V H -0.2968
13 H H -1.6303
14 H H -2.0758
15 Q H -2.6002
16 K H -1.8648
17 L H -0.6830
18 V H 0.0000
19 F H 0.7781
20 F H 0.1777
21 A H 0.0000
22 E H -2.0020
23 D H -2.6543
24 V H -1.5570
25 G H -1.4810
26 S H -0.9461
27 N H -0.6017
28 K H -0.9557
29 G H 0.0000
30 A H 0.0000
31 I H 0.0000
32 I H 0.0000
33 G H 0.0000
34 L H 0.6902
35 M H 0.0000
36 V H 0.0000
37 G H 0.0000
38 G H 0.0000
39 V H 0.0000
40 V H 0.0000
41 I H -0.1488
42 A H -0.1326
1 D I -2.0298
2 A I -1.3999
3 E I -2.0619
4 F I -0.5285
5 R I -2.5576
6 H I -2.5033
7 D I -3.1514
8 S I -2.0648
9 G I -1.5771
10 Y I -0.4780
11 E I -1.5088
12 V I -0.2508
13 H I -1.5763
14 H I -2.1287
15 Q I -2.4504
16 K I -1.6472
17 L I 0.2862
18 V I 1.1446
19 F I 1.5310
20 F I 1.5899
21 A I 0.0000
22 E I -2.5761
23 D I -3.1358
24 V I -1.8701
25 G I -1.8802
26 S I -1.8410
27 N I -1.6981
28 K I -2.1372
29 G I 0.0000
30 A I 0.0000
31 I I 0.0000
32 I I 0.5249
33 G I 0.0000
34 L I 0.7547
35 M I 0.0000
36 V I 0.0000
37 G I 0.0000
38 G I 0.0000
39 V I 0.0000
40 V I 0.0000
41 I I 0.0540
42 A I -0.2478
1 D J -2.0239
2 A J -1.3994
3 E J -2.2929
4 F J -0.2275
5 R J -2.1904
6 H J -1.6984
7 D J -0.6911
8 S J -0.5395
9 G J -0.3071
10 Y J -0.0985
11 E J -0.9781
12 V J 0.2408
13 H J -1.4777
14 H J -1.9791
15 Q J -2.6703
16 K J -2.3960
17 L J 0.0000
18 V J 0.1736
19 F J 1.0935
20 F J 1.1030
21 A J 0.0000
22 E J -1.7840
23 D J -2.5202
24 V J -1.5112
25 G J -1.3843
26 S J -0.7818
27 N J -0.5671
28 K J -0.8196
29 G J 0.0000
30 A J 0.0000
31 I J 0.0000
32 I J 0.0000
33 G J 0.0000
34 L J 0.6219
35 M J 0.0000
36 V J 0.0000
37 G J 0.0000
38 G J 0.1317
39 V J -0.2697
40 V J 0.0000
41 I J -0.4005
42 A J -0.5905
1 G K -0.4504
2 Y K 0.2012
3 E K -1.0597
4 V K -0.0879
5 H K -1.4085
6 H K -2.1183
7 Q K -2.4786
8 K K -2.7046
9 L K -1.0021
10 V K -0.3011
11 F K 0.9723
12 F K 1.7108
13 A K -0.1019
14 E K -2.1356
15 D K -2.9283
16 V K 0.0000
17 G K 0.0000
18 S K -1.8501
19 N K -2.2632
20 K K -2.8055
21 G K -1.5755
22 A K 0.0000
23 I K -0.4961
24 I K 0.0000
25 G K 0.2758
26 L K 0.2914
27 M K 0.0000
28 V K 0.0000
29 G K 0.0000
30 G K 0.5331
31 V K 0.5169
32 V K 0.3014
33 I K 1.1983
34 A K 0.7148
1 G L -0.1387
2 Y L 0.6320
3 E L -0.8200
4 V L 0.3297
5 H L -1.2465
6 H L -1.8916
7 Q L -2.2449
8 K L -1.7089
9 L L -0.1555
10 V L 0.8419
11 F L 1.1690
12 F L 1.3111
13 A L 0.0000
14 E L -2.3545
15 D L -3.1648
16 V L -2.1478
17 G L -1.9219
18 S L -1.8648
19 N L -1.8528
20 K L -2.2272
21 G L 0.0000
22 A L 0.0000
23 I L 0.0000
24 I L 0.0000
25 G L 0.0000
26 L L 0.4599
27 M L 0.0000
28 V L 0.0000
29 G L 0.0000
30 G L 0.0000
31 V L 0.4358
32 V L 0.0904
33 I L -0.0431
34 A L -0.4497
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018