Project name: a3b75a805a1aa7d

Status: done

Started: 2024-07-25 13:02:35
Settings
Chain sequence(s) E: MDVTIQHPWFKRTLGPFYPSRLFDQFFGEGLFEYDLLPFLSSTISPYYRQSLFRTVLDSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQDDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFCGPKIQTGLDATHAERAIPVSREEKPTSAPSS
input PDB
Selected Chain(s) E
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with E chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:04)
Show buried residues

Minimal score value
-3.9035
Maximal score value
2.0249
Average score
-0.7376
Total score value
-127.6039

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M E 0.9589
2 D E 0.4963
3 V E 1.5072
4 T E 1.2132
5 I E 1.2894
6 Q E 0.0000
7 H E -0.5603
8 P E -0.8508
9 W E -0.7944
10 F E 0.0000
11 K E -2.3703
12 R E -2.4620
13 T E 0.0000
14 L E -0.5740
15 G E -0.6731
16 P E -0.0655
17 F E 0.0000
18 Y E 1.2174
19 P E 0.5802
20 S E 0.1098
21 R E -1.9484
22 L E -0.4139
23 F E 0.0000
24 D E -1.6348
25 Q E -1.5980
26 F E -0.0118
27 F E 0.2930
28 G E -1.0991
29 E E -1.6032
30 G E -0.8957
31 L E 1.2582
32 F E 1.7764
33 E E -0.1213
34 Y E 0.7732
35 D E -0.2822
36 L E 1.5881
37 L E 2.0249
38 P E 0.9892
39 F E 0.7396
40 L E 1.0577
41 S E 0.5595
42 S E 0.7719
43 T E 1.1579
44 I E 1.9432
45 S E 0.8688
46 P E 0.0000
47 Y E 0.5478
48 Y E 0.0000
49 R E -1.3799
50 Q E 0.0000
51 S E -0.1920
52 L E 1.5299
53 F E 0.0000
54 R E 0.0000
55 T E 0.6961
56 V E 1.6117
57 L E 0.5132
58 D E -0.2326
59 S E 0.1287
60 G E 0.1748
61 I E 1.2331
62 S E 0.0000
63 E E -0.6326
64 V E 0.0000
65 R E -1.2298
66 S E 0.0000
67 D E -2.4157
68 R E -3.1472
69 D E -2.8459
70 K E -2.1215
71 F E 0.0000
72 V E 0.0000
73 I E 0.0000
74 F E -0.7978
75 L E 0.0000
76 D E -1.7295
77 V E 0.0000
78 K E -2.4188
79 H E -2.2349
80 F E 0.0000
81 S E -1.2540
82 P E 0.0000
83 E E -2.3830
84 D E -2.1979
85 L E 0.0000
86 T E -0.9337
87 V E 0.0000
88 K E -2.0009
89 V E 0.0000
90 Q E -2.7399
91 D E -2.2761
92 D E -1.4324
93 F E -1.3806
94 V E 0.0000
95 E E 0.0000
96 I E 0.0000
97 H E -1.7534
98 G E 0.0000
99 K E -3.9035
100 H E -3.4580
101 N E -3.3861
102 E E -3.2782
103 R E -3.4357
104 Q E -3.2643
105 D E -3.4800
106 D E -3.3787
107 H E -2.3185
108 G E -1.6448
109 Y E -0.9176
110 I E -0.8333
111 S E -2.6294
112 R E -3.7005
113 E E -3.8820
114 F E -2.0920
115 H E -2.1030
116 R E -1.8008
117 R E -2.2619
118 Y E 0.0000
119 R E 0.0000
120 L E 0.0000
121 P E 0.0000
122 S E 0.0000
123 N E 0.0000
124 V E 0.0000
125 D E -0.6477
126 Q E 0.0000
127 S E -1.0761
128 A E -0.4635
129 L E 0.0000
130 S E -0.8048
131 C E 0.0000
132 S E 0.0000
133 L E -1.5986
134 S E -1.5391
135 A E -1.2259
136 D E -2.1482
137 G E -1.6794
138 M E 0.0000
139 L E 0.0000
140 T E 0.0000
141 F E 0.0000
142 C E 0.0000
143 G E 0.0000
144 P E -0.6196
145 K E 0.0000
146 I E 0.3450
147 Q E -1.0331
148 T E -1.4808
149 G E -0.7317
150 L E -0.5815
151 D E -0.7560
152 A E -0.8126
153 T E -0.4621
154 H E 0.0000
155 A E -1.8272
156 E E -3.4340
157 R E -3.0829
158 A E -1.6845
159 I E 0.0000
160 P E -0.6531
161 V E -0.8892
162 S E -1.6740
163 R E -3.1101
164 E E -2.8503
165 E E -3.3490
166 K E -2.6848
167 P E -1.4795
168 T E -0.8542
169 S E -1.1121
170 A E -0.4876
171 P E -0.4407
172 S E -0.4519
173 S E -0.3752
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018