| Chain sequence(s) |
A: FEFEFEGKGH
C: FEFEFEGKGH B: FEFEFEGKGH E: FEFEFEGKGH D: FEFEFEGKGH G: FEFEFEGKGH F: FEFEFEGKGH H: FEFEFEGKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:44)
[INFO] Main: Simulation completed successfully. (00:04:46)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | -0.4048 | |
| 2 | E | A | -2.7593 | |
| 3 | F | A | 0.0000 | |
| 4 | E | A | -4.2336 | |
| 5 | F | A | 0.0000 | |
| 6 | E | A | -4.5543 | |
| 7 | G | A | 0.0000 | |
| 8 | K | A | -3.5963 | |
| 9 | G | A | 0.0000 | |
| 10 | H | A | -1.6482 | |
| 1 | F | B | -0.6302 | |
| 2 | E | B | -2.8716 | |
| 3 | F | B | 0.0000 | |
| 4 | E | B | -4.4260 | |
| 5 | F | B | 0.0000 | |
| 6 | E | B | -4.3143 | |
| 7 | G | B | 0.0000 | |
| 8 | K | B | -2.9522 | |
| 9 | G | B | 0.0000 | |
| 10 | H | B | -1.5039 | |
| 1 | F | C | 0.4226 | |
| 2 | E | C | -2.1746 | |
| 3 | F | C | 0.0000 | |
| 4 | E | C | -4.1572 | |
| 5 | F | C | 0.0000 | |
| 6 | E | C | -4.4823 | |
| 7 | G | C | 0.0000 | |
| 8 | K | C | -3.2821 | |
| 9 | G | C | 0.0000 | |
| 10 | H | C | -1.4620 | |
| 1 | F | D | 0.1701 | |
| 2 | E | D | -2.4449 | |
| 3 | F | D | 0.0000 | |
| 4 | E | D | -4.3462 | |
| 5 | F | D | 0.0000 | |
| 6 | E | D | -4.5341 | |
| 7 | G | D | 0.0000 | |
| 8 | K | D | -3.0444 | |
| 9 | G | D | 0.0000 | |
| 10 | H | D | -1.2280 | |
| 1 | F | E | 0.2495 | |
| 2 | E | E | -2.4116 | |
| 3 | F | E | 0.0000 | |
| 4 | E | E | -4.4344 | |
| 5 | F | E | 0.0000 | |
| 6 | E | E | -4.6894 | |
| 7 | G | E | 0.0000 | |
| 8 | K | E | -3.4013 | |
| 9 | G | E | 0.0000 | |
| 10 | H | E | -1.6578 | |
| 1 | F | F | -0.8740 | |
| 2 | E | F | -2.9905 | |
| 3 | F | F | 0.0000 | |
| 4 | E | F | -4.4180 | |
| 5 | F | F | 0.0000 | |
| 6 | E | F | -4.6814 | |
| 7 | G | F | -3.6412 | |
| 8 | K | F | -3.4414 | |
| 9 | G | F | 0.0000 | |
| 10 | H | F | -1.3551 | |
| 1 | F | G | 0.3186 | |
| 2 | E | G | -2.5291 | |
| 3 | F | G | 0.0000 | |
| 4 | E | G | -4.3708 | |
| 5 | F | G | 0.0000 | |
| 6 | E | G | -4.5674 | |
| 7 | G | G | 0.0000 | |
| 8 | K | G | -3.5141 | |
| 9 | G | G | 0.0000 | |
| 10 | H | G | -1.5815 | |
| 1 | F | H | 0.1387 | |
| 2 | E | H | -2.5606 | |
| 3 | F | H | 0.0000 | |
| 4 | E | H | -4.4193 | |
| 5 | F | H | 0.0000 | |
| 6 | E | H | -4.5601 | |
| 7 | G | H | 0.0000 | |
| 8 | K | H | -3.3444 | |
| 9 | G | H | 0.0000 | |
| 10 | H | H | -1.4943 |