Project name: query_structure

Status: done

Started: 2026-03-17 00:29:55
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Chain sequence(s) A: QVQLQESGGGLVQAGGSLRLSCVGSGSMSSINGMGWYRQAPGREREFLAAISWSGGSTYYAGSVKGRSTISRDLAKNTGYLEMTRVKPEDTAVYYCAASETGLPYEYDYWGQGTQVTVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:44)
Show buried residues

Minimal score value
-3.6793
Maximal score value
1.0115
Average score
-0.7905
Total score value
-94.8574

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3342
2 V A -1.0787
3 Q A -1.5663
4 L A 0.0000
5 Q A -1.4133
6 E A 0.0000
7 S A -1.0137
8 G A -1.1677
9 G A -0.9196
10 G A 0.0629
11 L A 1.0115
12 V A -0.0222
13 Q A -1.5066
14 A A -1.9264
15 G A -2.1178
16 G A -1.6413
17 S A -1.8546
18 L A 0.0000
19 R A -2.4788
20 L A 0.0000
21 S A -0.7592
22 C A 0.0000
23 V A -0.3298
24 G A 0.0000
25 S A -0.8980
26 G A -0.8811
27 S A -0.6769
28 M A 0.0000
29 S A -0.5170
30 S A -0.8651
31 I A 0.0000
32 N A -0.9773
33 G A -0.5646
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 Y A 0.0000
38 R A 0.0000
39 Q A -2.2179
40 A A -2.1037
41 P A -1.5223
42 G A -2.0826
43 R A -3.5224
44 E A -3.6793
45 R A -2.9031
46 E A -1.6636
47 F A -0.1724
48 L A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 S A -0.2006
53 W A -0.3074
54 S A -0.3515
55 G A -0.5657
56 G A -0.6284
57 S A -0.2176
58 T A 0.1970
59 Y A 0.6122
60 Y A -0.0486
61 A A -0.4464
62 G A -0.9883
63 S A -0.8972
64 V A 0.0000
65 K A -2.0502
66 G A -1.7237
67 R A -1.7762
68 S A 0.0000
69 T A -0.9168
70 I A 0.0000
71 S A -0.3898
72 R A -0.4152
73 D A -0.6490
74 L A -0.2204
75 A A -0.7084
76 K A -1.5973
77 N A -0.9215
78 T A -0.5281
79 G A 0.0000
80 Y A -0.6372
81 L A 0.0000
82 E A -1.9069
83 M A 0.0000
84 T A -2.0410
85 R A -2.8159
86 V A 0.0000
87 K A -3.0028
88 P A -2.0203
89 E A -2.4092
90 D A 0.0000
91 T A -0.9952
92 A A 0.0000
93 V A -0.7480
94 Y A 0.0000
95 Y A -0.5874
96 C A 0.0000
97 A A 0.0000
98 A A 0.0000
99 S A 0.0000
100 E A -1.9088
101 T A -1.1752
102 G A -0.5274
103 L A 0.3107
104 P A 0.3393
105 Y A 0.4371
106 E A -1.4645
107 Y A -1.2643
108 D A -1.9917
109 Y A -1.0624
110 W A -0.4661
111 G A -0.8333
112 Q A -1.6187
113 G A -1.0703
114 T A -1.1568
115 Q A -1.2423
116 V A 0.0000
117 T A -0.3425
118 V A 0.0000
119 S A -0.7417
120 S A -0.8724
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Laboratory of Theory of Biopolymers 2018