| Chain sequence(s) |
A: QVQLQESGGGLVQAGGSLRLSCVGSGSMSSINGMGWYRQAPGREREFLAAISWSGGSTYYAGSVKGRSTISRDLAKNTGYLEMTRVKPEDTAVYYCAASETGLPYEYDYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:44)
[INFO] Main: Simulation completed successfully. (00:01:44)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.3342 | |
| 2 | V | A | -1.0787 | |
| 3 | Q | A | -1.5663 | |
| 4 | L | A | 0.0000 | |
| 5 | Q | A | -1.4133 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -1.0137 | |
| 8 | G | A | -1.1677 | |
| 9 | G | A | -0.9196 | |
| 10 | G | A | 0.0629 | |
| 11 | L | A | 1.0115 | |
| 12 | V | A | -0.0222 | |
| 13 | Q | A | -1.5066 | |
| 14 | A | A | -1.9264 | |
| 15 | G | A | -2.1178 | |
| 16 | G | A | -1.6413 | |
| 17 | S | A | -1.8546 | |
| 18 | L | A | 0.0000 | |
| 19 | R | A | -2.4788 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.7592 | |
| 22 | C | A | 0.0000 | |
| 23 | V | A | -0.3298 | |
| 24 | G | A | 0.0000 | |
| 25 | S | A | -0.8980 | |
| 26 | G | A | -0.8811 | |
| 27 | S | A | -0.6769 | |
| 28 | M | A | 0.0000 | |
| 29 | S | A | -0.5170 | |
| 30 | S | A | -0.8651 | |
| 31 | I | A | 0.0000 | |
| 32 | N | A | -0.9773 | |
| 33 | G | A | -0.5646 | |
| 34 | M | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -2.2179 | |
| 40 | A | A | -2.1037 | |
| 41 | P | A | -1.5223 | |
| 42 | G | A | -2.0826 | |
| 43 | R | A | -3.5224 | |
| 44 | E | A | -3.6793 | |
| 45 | R | A | -2.9031 | |
| 46 | E | A | -1.6636 | |
| 47 | F | A | -0.1724 | |
| 48 | L | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | S | A | -0.2006 | |
| 53 | W | A | -0.3074 | |
| 54 | S | A | -0.3515 | |
| 55 | G | A | -0.5657 | |
| 56 | G | A | -0.6284 | |
| 57 | S | A | -0.2176 | |
| 58 | T | A | 0.1970 | |
| 59 | Y | A | 0.6122 | |
| 60 | Y | A | -0.0486 | |
| 61 | A | A | -0.4464 | |
| 62 | G | A | -0.9883 | |
| 63 | S | A | -0.8972 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.0502 | |
| 66 | G | A | -1.7237 | |
| 67 | R | A | -1.7762 | |
| 68 | S | A | 0.0000 | |
| 69 | T | A | -0.9168 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.3898 | |
| 72 | R | A | -0.4152 | |
| 73 | D | A | -0.6490 | |
| 74 | L | A | -0.2204 | |
| 75 | A | A | -0.7084 | |
| 76 | K | A | -1.5973 | |
| 77 | N | A | -0.9215 | |
| 78 | T | A | -0.5281 | |
| 79 | G | A | 0.0000 | |
| 80 | Y | A | -0.6372 | |
| 81 | L | A | 0.0000 | |
| 82 | E | A | -1.9069 | |
| 83 | M | A | 0.0000 | |
| 84 | T | A | -2.0410 | |
| 85 | R | A | -2.8159 | |
| 86 | V | A | 0.0000 | |
| 87 | K | A | -3.0028 | |
| 88 | P | A | -2.0203 | |
| 89 | E | A | -2.4092 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9952 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7480 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.5874 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | A | A | 0.0000 | |
| 99 | S | A | 0.0000 | |
| 100 | E | A | -1.9088 | |
| 101 | T | A | -1.1752 | |
| 102 | G | A | -0.5274 | |
| 103 | L | A | 0.3107 | |
| 104 | P | A | 0.3393 | |
| 105 | Y | A | 0.4371 | |
| 106 | E | A | -1.4645 | |
| 107 | Y | A | -1.2643 | |
| 108 | D | A | -1.9917 | |
| 109 | Y | A | -1.0624 | |
| 110 | W | A | -0.4661 | |
| 111 | G | A | -0.8333 | |
| 112 | Q | A | -1.6187 | |
| 113 | G | A | -1.0703 | |
| 114 | T | A | -1.1568 | |
| 115 | Q | A | -1.2423 | |
| 116 | V | A | 0.0000 | |
| 117 | T | A | -0.3425 | |
| 118 | V | A | 0.0000 | |
| 119 | S | A | -0.7417 | |
| 120 | S | A | -0.8724 |