| Chain sequence(s) |
A: MEELKRRFEERAERQLATYLRRLEVLKEAGASPDAEARFRARAEGLTATLLRLLEVLQRASSPEELLDSLMRRFARGLRRALQELL
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VG56A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.859446 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:52)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:55)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:40)
[INFO] Main: Simulation completed successfully. (00:01:40)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | M | A | -2.4173 | |
| 2 | E | A | -3.6283 | |
| 3 | E | A | -3.9275 | |
| 4 | L | A | 0.0000 | |
| 5 | K | A | -4.0501 | |
| 6 | R | A | -4.8670 | |
| 7 | R | A | -4.6594 | |
| 8 | F | A | 0.0000 | |
| 9 | E | A | -4.5669 | |
| 10 | E | A | -4.8149 | |
| 11 | R | A | -4.1687 | |
| 12 | A | A | 0.0000 | |
| 13 | E | A | -4.1054 | |
| 14 | R | A | -3.7074 | |
| 15 | Q | A | -2.1821 | |
| 16 | L | A | -2.2046 | |
| 17 | A | A | -1.9800 | |
| 18 | T | A | -1.7678 | |
| 19 | Y | A | 0.0000 | |
| 20 | L | A | -2.0799 | |
| 21 | R | A | -2.8122 | |
| 22 | R | A | -2.9321 | |
| 23 | L | A | 0.0000 | |
| 24 | E | A | -2.9546 | |
| 25 | V | A | -0.9334 | |
| 26 | L | A | -1.3278 | |
| 27 | K | A | -2.3534 | |
| 28 | E | A | -2.2801 | |
| 29 | A | A | -0.9086 | |
| 30 | G | A | -0.5891 | |
| 31 | A | A | -1.3253 | |
| 32 | S | A | -1.2553 | |
| 33 | P | A | -1.8044 | |
| 34 | D | A | -2.6934 | |
| 35 | A | A | 0.0000 | |
| 36 | E | A | -2.9201 | |
| 37 | A | A | -2.3277 | |
| 38 | R | A | -3.3530 | |
| 39 | F | A | 0.0000 | |
| 40 | R | A | -2.5284 | |
| 41 | A | A | -2.3123 | |
| 42 | R | A | -2.3147 | |
| 43 | A | A | 0.0000 | |
| 44 | E | A | -2.5790 | |
| 45 | G | A | -1.4500 | |
| 46 | L | A | -1.0530 | |
| 47 | T | A | -1.2879 | |
| 48 | A | A | -1.0185 | |
| 49 | T | A | -0.6731 | |
| 50 | L | A | 0.0000 | |
| 51 | L | A | -1.3023 | |
| 52 | R | A | -2.1850 | |
| 53 | L | A | -0.9211 | |
| 54 | L | A | 0.0000 | |
| 55 | E | A | -2.7868 | |
| 56 | G | A | -1.6945 | mutated: VG56A |
| 57 | L | A | -0.9660 | |
| 58 | Q | A | -1.8909 | |
| 59 | R | A | -2.1624 | |
| 60 | A | A | -1.0615 | |
| 61 | S | A | -1.3235 | |
| 62 | S | A | -1.6735 | |
| 63 | P | A | -2.4825 | |
| 64 | E | A | -3.4517 | |
| 65 | E | A | -3.3650 | |
| 66 | L | A | 0.0000 | |
| 67 | L | A | 0.0000 | |
| 68 | D | A | -3.5154 | |
| 69 | S | A | -2.5711 | |
| 70 | L | A | 0.0000 | |
| 71 | M | A | -2.6400 | |
| 72 | R | A | -3.4225 | |
| 73 | R | A | -3.1030 | |
| 74 | F | A | 0.0000 | |
| 75 | A | A | -2.6459 | |
| 76 | R | A | -3.8886 | |
| 77 | G | A | -2.8646 | |
| 78 | L | A | 0.0000 | |
| 79 | R | A | -4.0897 | |
| 80 | R | A | -4.0686 | |
| 81 | A | A | -3.0595 | |
| 82 | L | A | 0.0000 | |
| 83 | Q | A | -2.6646 | |
| 84 | E | A | -2.5734 | |
| 85 | L | A | -1.2805 | |
| 86 | L | A | 0.5480 |