Project name: 3BKY

Status: done

Started: 2026-03-23 04:52:14
Settings
Chain sequence(s) H: QAYLQQSGAELVRPGASVKMSCKASGYTFTSYNMHWVKQTPRQGLEWIGAIYPGNGDTSYNQKFKGKATLTVDKSSSTAYMQLSSLTSEDSAVYFCARVVYYSNSYWYFDVWGTGTTVTVSAASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
L: QIVLSQSPAILSASPGEKVTMTCRASSSVSYMHWYQQKPGSSPKPWIYAPSNLASGVPARFSGSGSGTSYSLTISRVEAEDAATYYCQQWSFNPPTFGAGTKLELKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
P: CEPANPSEKNSPSTQYC
input PDB
Selected Chain(s) H,L,P
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:13)
Show buried residues

Minimal score value
-3.7824
Maximal score value
1.4583
Average score
-0.6705
Total score value
-305.7364

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -0.9488
2 A H -0.2814
3 Y H 0.3004
4 L H 0.0000
5 Q H -1.4862
6 Q H -1.1561
7 S H -1.0434
8 G H -1.0548
9 A H -0.9300
10 E H -1.3585
11 L H -0.7074
12 V H 0.0000
13 R H -2.1937
14 P H -1.6293
15 G H -1.2239
16 A H -1.0282
17 S H -1.1766
18 V H 0.0000
19 K H -2.0468
20 M H 0.0000
21 S H -1.1000
22 C H 0.0000
23 K H -1.9127
24 A H 0.0000
25 S H -0.6715
26 G H -0.4826
27 Y H -0.0545
28 T H -0.0818
29 F H -0.1666
30 T H -0.3568
31 S H -0.0329
32 Y H 0.3700
33 N H 0.0000
34 M H 0.0000
35 H H 0.0000
36 W H 0.0000
37 V H 0.0000
38 K H -0.4160
39 Q H -0.7891
40 T H -1.3907
41 P H -1.4369
42 R H -2.5936
43 Q H -2.2954
44 G H -1.5085
45 L H 0.0000
46 E H -0.8966
47 W H 0.0000
48 I H 0.0000
49 G H 0.0000
50 A H 0.0000
51 I H 0.0000
52 Y H -0.5098
53 P H -0.9512
54 G H -1.0617
55 N H -1.6529
56 G H -1.2235
57 D H -1.3589
58 T H -0.5382
59 S H 0.0000
60 Y H -0.2075
61 N H 0.0000
62 Q H -2.3783
63 K H -2.7808
64 F H 0.0000
65 K H -2.7315
66 G H -1.8568
67 K H -1.4964
68 A H -1.2017
69 T H -0.6018
70 L H 0.0000
71 T H -0.3839
72 V H -0.6485
73 D H -1.8212
74 K H -2.2139
75 S H -1.2567
76 S H -1.2327
77 S H -1.1145
78 T H 0.0000
79 A H 0.0000
80 Y H -0.6241
81 M H 0.0000
82 Q H -1.3191
83 L H 0.0000
84 S H -0.8985
85 S H -0.8869
86 L H 0.0000
87 T H -1.3482
88 S H -1.4970
89 E H -1.9823
90 D H 0.0000
91 S H -0.7204
92 A H 0.0000
93 V H 0.0776
94 Y H 0.0000
95 F H 0.0000
96 C H 0.0000
97 A H 0.0000
98 R H 0.0000
99 V H 0.0000
100 V H 0.8392
101 Y H 1.0790
102 Y H 1.2829
103 S H 0.1950
104 N H -0.4471
105 S H 0.0168
106 Y H 0.0000
107 W H 0.7801
108 Y H 0.0000
109 F H 0.0000
110 D H -0.3992
111 V H 0.0794
112 W H 0.0000
113 G H 0.0000
114 T H -0.4102
115 G H 0.0000
116 T H 0.0000
117 T H -0.3178
118 V H 0.0000
119 T H -0.7885
120 V H 0.0000
121 S H -0.8541
122 A H -0.7584
123 A H -0.5178
124 S H -0.6526
125 T H -1.0200
126 K H -1.4376
127 G H -1.5237
128 P H -0.7437
129 S H -0.4468
130 V H 0.0000
131 F H 0.0000
132 P H -1.1907
133 L H 0.0000
134 A H -1.1796
135 P H 0.0000
136 S H -1.2327
137 S H -1.0451
138 K H -0.9441
139 S H 0.0000
140 T H -0.5871
141 S H -0.7038
142 G H -0.8253
143 G H -0.8673
144 T H -0.6014
145 A H 0.0000
146 A H 0.0000
147 L H 0.0000
148 G H 0.0000
149 C H 0.0000
150 L H 0.0000
151 V H 0.0000
152 K H 0.0000
153 D H -0.4970
154 Y H 0.0000
155 F H 0.0000
156 P H 0.0000
157 E H -0.7444
158 P H -1.0364
159 V H -0.8801
160 T H -0.7468
161 V H -0.3560
162 S H -0.5128
163 W H 0.0000
164 N H -0.8638
165 S H -0.6964
166 G H -0.6210
167 A H -0.2833
168 L H -0.0629
169 T H -0.2527
170 S H -0.3191
171 G H -0.4060
172 V H 0.0809
173 H H -0.3577
174 T H 0.0289
175 F H 0.0000
176 P H -0.3288
177 A H 0.2471
178 V H 0.6365
179 L H 1.4416
180 Q H 0.4256
181 S H -0.0670
182 S H -0.2025
183 G H 0.0464
184 L H 0.0907
185 Y H 0.3875
186 S H 0.0000
187 L H 0.0000
188 S H 0.0000
189 S H 0.0000
190 V H 0.0000
191 V H 0.0000
192 T H -0.2105
193 V H 0.0000
194 P H -0.6222
195 S H -0.6494
196 S H -0.5900
197 S H -0.6192
198 L H -0.8765
199 G H -0.9122
200 T H -0.6705
201 Q H -0.9013
202 T H -1.0296
203 Y H 0.0000
204 I H -1.3229
205 C H 0.0000
206 N H -1.6820
207 V H 0.0000
208 N H -2.4067
209 H H 0.0000
210 K H -2.8608
211 P H -1.8190
212 S H -1.9376
213 N H -2.6640
214 T H -2.1792
215 K H -2.8492
216 V H -1.6253
217 D H -2.7316
218 K H -2.2961
219 K H -2.7474
220 V H 0.0000
221 E H -2.7269
222 P H -1.9773
223 K H -2.2348
224 S H -1.6258
225 C H -1.5985
226 D H -2.0413
1 Q L -0.5999
2 I L 0.0000
3 V L 1.2130
4 L L 0.0000
5 S L -0.5328
6 Q L -0.6071
7 S L -0.3846
8 P L 0.2597
9 A L 0.5699
10 I L 1.4583
11 L L 0.4502
12 S L -0.2914
13 A L 0.0000
14 S L -1.9254
15 P L -2.0404
16 G L -2.1894
17 E L -2.9741
18 K L -2.9973
19 V L 0.0000
20 T L -0.5588
21 M L 0.0000
22 T L -0.7267
23 C L 0.0000
24 R L -1.8999
25 A L -0.7148
26 S L -0.3303
27 S L -0.2650
28 S L -0.4751
29 V L 0.0000
30 S L -0.0817
31 Y L 0.0992
32 M L 0.0000
33 H L 0.0000
34 W L 0.0000
35 Y L 0.0000
36 Q L 0.0000
37 Q L 0.0000
38 K L -1.5953
39 P L -1.1840
40 G L -0.9778
41 S L -0.8307
42 S L -0.6188
43 P L 0.0000
44 K L -1.3603
45 P L 0.0000
46 W L 0.0000
47 I L 0.0000
48 Y L 0.0533
49 A L 0.0000
50 P L -0.2660
51 S L -0.4015
52 N L -0.4423
53 L L 0.0709
54 A L 0.0000
55 S L -0.4369
56 G L -0.5149
57 V L 0.0000
58 P L -0.2353
59 A L -0.3670
60 R L -1.1601
61 F L 0.0000
62 S L -0.3687
63 G L -0.4240
64 S L -0.5842
65 G L -0.8204
66 S L -0.5364
67 G L -0.6948
68 T L -0.9748
69 S L -1.0677
70 Y L 0.0000
71 S L -0.6268
72 L L 0.0000
73 T L -0.7628
74 I L 0.0000
75 S L -2.1978
76 R L -3.2828
77 V L 0.0000
78 E L -2.4094
79 A L -2.2840
80 E L -2.4113
81 D L 0.0000
82 A L -1.7244
83 A L 0.0000
84 T L 0.0000
85 Y L 0.0000
86 Y L 0.0000
87 C L 0.0000
88 Q L 0.0000
89 Q L 0.0000
90 W L 0.0000
91 S L 0.2895
92 F L 0.7032
93 N L -0.4735
94 P L -0.8399
95 P L 0.0000
96 T L 0.0000
97 F L 0.0000
98 G L 0.0000
99 A L -0.5759
100 G L -0.1925
101 T L 0.0000
102 K L -0.7022
103 L L 0.0000
104 E L -0.6283
105 L L 0.0000
106 K L -1.6630
107 R L -1.0078
108 T L 0.1613
109 V L 1.1577
110 A L 0.3717
111 A L 0.0463
112 P L 0.0000
113 S L -0.1340
114 V L -0.1714
115 F L 0.0000
116 I L 0.0000
117 F L 0.0000
118 P L -0.7443
119 P L 0.0000
120 S L -1.4719
121 D L -2.8521
122 E L -2.6858
123 Q L 0.0000
124 L L -2.2073
125 K L -2.7874
126 S L -1.7512
127 G L -1.4703
128 T L -1.0646
129 A L 0.0000
130 S L 0.0000
131 V L 0.0000
132 V L 0.0000
133 C L 0.0000
134 L L 0.0000
135 L L 0.0000
136 N L 0.0000
137 N L -1.0795
138 F L 0.0000
139 Y L 0.0000
140 P L -1.6174
141 R L -3.0537
142 E L -3.1931
143 A L -2.3776
144 K L -2.4781
145 V L -1.1450
146 Q L -0.6152
147 W L 0.0000
148 K L -0.4642
149 V L 0.0000
150 D L -1.9218
151 N L -1.4831
152 A L -0.1925
153 L L 0.7467
154 Q L -0.0567
155 S L -0.4044
156 G L -0.8624
157 N L -0.7782
158 S L -1.0368
159 Q L -1.1338
160 E L -1.7810
161 S L 0.0000
162 V L -0.6271
163 T L -1.1106
164 E L -2.3290
165 Q L -2.2021
166 D L -2.2449
167 S L -2.4057
168 K L -2.7530
169 D L -2.1228
170 S L 0.0000
171 T L 0.0000
172 Y L 0.0000
173 S L 0.0000
174 L L 0.0000
175 S L 0.0000
176 S L 0.0000
177 T L -0.6288
178 L L 0.0000
179 T L -0.4173
180 L L -0.7695
181 S L -1.1443
182 K L -2.2408
183 A L -2.0083
184 D L -2.5551
185 Y L 0.0000
186 E L -3.7824
187 K L -3.7180
188 H L -3.1017
189 K L -3.3758
190 V L -1.5102
191 Y L 0.0000
192 A L 0.0000
193 C L 0.0000
194 E L -0.7878
195 V L 0.0000
196 T L -1.2602
197 H L 0.0000
198 Q L -1.5857
199 G L -0.1901
200 L L -0.1481
201 S L -0.4508
202 S L -0.4636
203 P L -0.6284
204 V L -0.0973
205 T L -0.4934
206 K L -0.7696
207 S L -0.6357
208 F L 0.0000
209 N L -2.0342
210 R L -2.6239
211 G L -2.3089
212 E L -2.3280
213 C L -1.4342
167 C P 0.0572
168 E P -1.6242
169 P P -1.1291
170 A P 0.0000
171 N P 0.0000
172 P P 0.0000
173 S P -0.9765
174 E P -1.4213
175 K P -2.0601
176 N P -2.2984
177 S P -1.4726
178 P P -0.9253
179 S P -0.5771
180 T P -0.8010
181 Q P -0.8576
182 Y P 1.0383
183 C P 0.8832
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018