Project name: a4badc40be7288e

Status: done

Started: 2026-05-21 15:38:02
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Chain sequence(s) A: KGHKGHG
C: KGHKGHG
B: KGHKGHG
E: KGHKGHG
D: KGHKGHG
G: KGHKGHG
F: KGHKGHG
I: KGHKGHG
H: KGHKGHG
K: KGHKGHG
J: KGHKGHG
L: KGHKGHG
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:15)
Show buried residues

Minimal score value
-3.3469
Maximal score value
0.0
Average score
-1.9517
Total score value
-163.9458

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.8087
2 G A -2.4857
3 H A 0.0000
4 K A -2.3671
5 G A 0.0000
6 H A -1.9932
7 G A -1.8125
1 K B -2.9379
2 G B -2.4686
3 H B -2.9485
4 K B -3.1133
5 G B -2.9823
6 H B -2.4959
7 G B -2.1325
1 K C -2.9553
2 G C -2.7244
3 H C -3.3469
4 K C -3.3011
5 G C -2.9016
6 H C -2.3907
7 G C -2.0002
1 K D -3.0731
2 G D -2.7757
3 H D 0.0000
4 K D -2.6650
5 G D 0.0000
6 H D -2.2640
7 G D -2.0435
1 K E -2.6380
2 G E -2.2251
3 H E 0.0000
4 K E -1.9487
5 G E 0.0000
6 H E -1.4853
7 G E -1.6430
1 K F -2.8393
2 G F -2.3367
3 H F 0.0000
4 K F -2.1551
5 G F 0.0000
6 H F -1.4650
7 G F -1.5124
1 K G -2.9450
2 G G -2.7125
3 H G 0.0000
4 K G -2.6298
5 G G 0.0000
6 H G -1.9850
7 G G -1.8975
1 K H -2.9232
2 G H -2.7826
3 H H -2.8731
4 K H -3.0628
5 G H 0.0000
6 H H -2.4467
7 G H -2.1261
1 K I -2.8740
2 G I -2.7504
3 H I -2.9215
4 K I -3.1168
5 G I -2.5589
6 H I -2.3024
7 G I -1.8336
1 K J -3.0121
2 G J -2.8262
3 H J 0.0000
4 K J -3.0917
5 G J 0.0000
6 H J -2.2281
7 G J -1.9468
1 K K -2.5642
2 G K -2.1868
3 H K 0.0000
4 K K -2.4853
5 G K 0.0000
6 H K -1.7769
7 G K -1.7053
1 K L -2.5354
2 G L -2.1870
3 H L 0.0000
4 K L -2.2433
5 G L 0.0000
6 H L -1.5956
7 G L -1.5829
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Laboratory of Theory of Biopolymers 2018