| Chain sequence(s) |
A: KGHKGHG
C: KGHKGHG B: KGHKGHG E: KGHKGHG D: KGHKGHG G: KGHKGHG F: KGHKGHG I: KGHKGHG H: KGHKGHG K: KGHKGHG J: KGHKGHG L: KGHKGHG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:13)
[INFO] Main: Simulation completed successfully. (00:03:15)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -2.8087 | |
| 2 | G | A | -2.4857 | |
| 3 | H | A | 0.0000 | |
| 4 | K | A | -2.3671 | |
| 5 | G | A | 0.0000 | |
| 6 | H | A | -1.9932 | |
| 7 | G | A | -1.8125 | |
| 1 | K | B | -2.9379 | |
| 2 | G | B | -2.4686 | |
| 3 | H | B | -2.9485 | |
| 4 | K | B | -3.1133 | |
| 5 | G | B | -2.9823 | |
| 6 | H | B | -2.4959 | |
| 7 | G | B | -2.1325 | |
| 1 | K | C | -2.9553 | |
| 2 | G | C | -2.7244 | |
| 3 | H | C | -3.3469 | |
| 4 | K | C | -3.3011 | |
| 5 | G | C | -2.9016 | |
| 6 | H | C | -2.3907 | |
| 7 | G | C | -2.0002 | |
| 1 | K | D | -3.0731 | |
| 2 | G | D | -2.7757 | |
| 3 | H | D | 0.0000 | |
| 4 | K | D | -2.6650 | |
| 5 | G | D | 0.0000 | |
| 6 | H | D | -2.2640 | |
| 7 | G | D | -2.0435 | |
| 1 | K | E | -2.6380 | |
| 2 | G | E | -2.2251 | |
| 3 | H | E | 0.0000 | |
| 4 | K | E | -1.9487 | |
| 5 | G | E | 0.0000 | |
| 6 | H | E | -1.4853 | |
| 7 | G | E | -1.6430 | |
| 1 | K | F | -2.8393 | |
| 2 | G | F | -2.3367 | |
| 3 | H | F | 0.0000 | |
| 4 | K | F | -2.1551 | |
| 5 | G | F | 0.0000 | |
| 6 | H | F | -1.4650 | |
| 7 | G | F | -1.5124 | |
| 1 | K | G | -2.9450 | |
| 2 | G | G | -2.7125 | |
| 3 | H | G | 0.0000 | |
| 4 | K | G | -2.6298 | |
| 5 | G | G | 0.0000 | |
| 6 | H | G | -1.9850 | |
| 7 | G | G | -1.8975 | |
| 1 | K | H | -2.9232 | |
| 2 | G | H | -2.7826 | |
| 3 | H | H | -2.8731 | |
| 4 | K | H | -3.0628 | |
| 5 | G | H | 0.0000 | |
| 6 | H | H | -2.4467 | |
| 7 | G | H | -2.1261 | |
| 1 | K | I | -2.8740 | |
| 2 | G | I | -2.7504 | |
| 3 | H | I | -2.9215 | |
| 4 | K | I | -3.1168 | |
| 5 | G | I | -2.5589 | |
| 6 | H | I | -2.3024 | |
| 7 | G | I | -1.8336 | |
| 1 | K | J | -3.0121 | |
| 2 | G | J | -2.8262 | |
| 3 | H | J | 0.0000 | |
| 4 | K | J | -3.0917 | |
| 5 | G | J | 0.0000 | |
| 6 | H | J | -2.2281 | |
| 7 | G | J | -1.9468 | |
| 1 | K | K | -2.5642 | |
| 2 | G | K | -2.1868 | |
| 3 | H | K | 0.0000 | |
| 4 | K | K | -2.4853 | |
| 5 | G | K | 0.0000 | |
| 6 | H | K | -1.7769 | |
| 7 | G | K | -1.7053 | |
| 1 | K | L | -2.5354 | |
| 2 | G | L | -2.1870 | |
| 3 | H | L | 0.0000 | |
| 4 | K | L | -2.2433 | |
| 5 | G | L | 0.0000 | |
| 6 | H | L | -1.5956 | |
| 7 | G | L | -1.5829 |