Project name: Lactiplantibacillus

Status: done

Started: 2025-10-09 14:21:56
Settings
Chain sequence(s) A: ILMVWRANGAWCVQINGLQKRVYDI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:14)
Show buried residues

Minimal score value
-2.1275
Maximal score value
2.6459
Average score
0.144
Total score value
3.6007

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 I A 2.6459
2 L A 2.3643
3 M A 1.9278
4 V A 0.8670
5 W A 0.4681
6 R A -1.4736
7 A A -0.8515
8 N A -1.2208
9 G A 0.0000
10 A A 0.0194
11 W A 0.4903
12 C A -0.2943
13 V A 0.5194
14 Q A 0.2108
15 I A 0.8318
16 N A -0.4563
17 G A -0.0961
18 L A 0.3017
19 Q A -1.2425
20 K A -2.1275
21 R A -1.8888
22 V A 0.4660
23 Y A 0.8445
24 D A -0.1346
25 I A 1.4297
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Laboratory of Theory of Biopolymers 2018