| Chain sequence(s) |
H: QVQLQQSGGELAKPGASVKVSCKASGYTFSSFWMHWVRQAPGQGLEWIGYINPRSGYTEYNEIFRDKATMTTDTSTSTAYMELSSLRSEDTAVYYCASFLGRGAMDYWGQGTTVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQDISNYLAWYQQKPGKAPKLLIYYTSKIHSGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQQGNTFPYTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:53)
[INFO] Main: Simulation completed successfully. (00:01:55)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5542 | |
| 2 | V | H | -1.1427 | |
| 3 | Q | H | -2.0603 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.2143 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -1.2127 | |
| 8 | G | H | -1.0881 | |
| 9 | G | H | -0.5118 | |
| 11 | E | H | -0.1603 | |
| 12 | L | H | 0.8933 | |
| 13 | A | H | -0.5076 | |
| 14 | K | H | -1.9719 | |
| 15 | P | H | -1.8762 | |
| 16 | G | H | -1.4689 | |
| 17 | A | H | -1.1314 | |
| 18 | S | H | -1.2759 | |
| 19 | V | H | -1.0084 | |
| 20 | K | H | -1.9739 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.9797 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.8608 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.3347 | |
| 27 | G | H | -1.0901 | |
| 28 | Y | H | -0.4024 | |
| 29 | T | H | -0.0240 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.8058 | |
| 36 | S | H | -0.1370 | |
| 37 | F | H | 0.3530 | |
| 38 | W | H | 0.3361 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | -0.4665 | |
| 44 | Q | H | -0.6906 | |
| 45 | A | H | 0.0000 | |
| 46 | P | H | -1.0374 | |
| 47 | G | H | -1.2084 | |
| 48 | Q | H | -1.8433 | |
| 49 | G | H | -1.3193 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.5645 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | Y | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -0.4162 | |
| 58 | P | H | 0.0000 | |
| 59 | R | H | -1.8940 | |
| 62 | S | H | -0.9689 | |
| 63 | G | H | -0.5512 | |
| 64 | Y | H | 0.5785 | |
| 65 | T | H | 0.2575 | |
| 66 | E | H | -0.4906 | |
| 67 | Y | H | -0.7942 | |
| 68 | N | H | 0.0000 | |
| 69 | E | H | -1.9120 | |
| 70 | I | H | 0.2740 | |
| 71 | F | H | 0.0000 | |
| 72 | R | H | -2.8417 | |
| 74 | D | H | -2.7390 | |
| 75 | K | H | -1.7361 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -1.1428 | |
| 78 | M | H | 0.0000 | |
| 79 | T | H | -0.1480 | |
| 80 | T | H | -0.6566 | |
| 81 | D | H | -0.9630 | |
| 82 | T | H | -0.8587 | |
| 83 | S | H | -0.4376 | |
| 84 | T | H | -0.5657 | |
| 85 | S | H | -0.6573 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.6158 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.4698 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.3071 | |
| 93 | S | H | -1.3191 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.7353 | |
| 96 | S | H | -2.1578 | |
| 97 | E | H | -2.4487 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.8220 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.0572 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | S | H | 0.0000 | |
| 107 | F | H | 0.0000 | |
| 108 | L | H | 0.6758 | |
| 109 | G | H | -0.6824 | |
| 110 | R | H | -1.6490 | |
| 113 | G | H | 0.0000 | |
| 114 | A | H | 0.0103 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | 0.0000 | |
| 117 | Y | H | 0.1397 | |
| 118 | W | H | -0.6098 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.8471 | |
| 121 | G | H | -1.1109 | |
| 122 | T | H | 0.0000 | |
| 123 | T | H | -0.1677 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.3221 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.8389 | |
| 128 | S | H | -0.7064 | |
| 1 | D | L | -2.2752 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.2957 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.4449 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.7138 | |
| 8 | P | L | -0.6191 | |
| 9 | S | L | -0.8756 | |
| 10 | S | L | -1.0915 | |
| 11 | L | L | -0.8908 | |
| 12 | S | L | -1.2291 | |
| 13 | A | L | -1.0987 | |
| 14 | S | L | -0.7585 | |
| 15 | V | L | 0.1584 | |
| 16 | G | L | -0.5660 | |
| 17 | D | L | -1.7071 | |
| 18 | R | L | -2.2973 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6637 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.7948 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.8632 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -2.1669 | |
| 27 | Q | L | -2.5209 | |
| 28 | D | L | -2.5636 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.9910 | |
| 37 | N | L | -0.5716 | |
| 38 | Y | L | -0.2945 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -1.0579 | |
| 45 | K | L | -1.4297 | |
| 46 | P | L | -1.0710 | |
| 47 | G | L | -1.6405 | |
| 48 | K | L | -2.4799 | |
| 49 | A | L | -1.4637 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -0.9922 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.3087 | |
| 56 | Y | L | 0.2169 | |
| 57 | T | L | 0.0000 | |
| 65 | S | L | -0.4710 | |
| 66 | K | L | -0.7375 | |
| 67 | I | L | 0.0857 | |
| 68 | H | L | -0.1652 | |
| 69 | S | L | -0.4164 | |
| 70 | G | L | -0.4539 | |
| 71 | V | L | -0.2083 | |
| 72 | P | L | -0.2930 | |
| 74 | S | L | -0.3178 | |
| 75 | R | L | -0.7391 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.4310 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.7109 | |
| 80 | G | L | -1.0014 | |
| 83 | S | L | -1.2264 | |
| 84 | G | L | -1.6648 | |
| 85 | T | L | -2.1574 | |
| 86 | D | L | -2.2425 | |
| 87 | Y | L | 0.0000 | |
| 88 | T | L | -0.7155 | |
| 89 | F | L | 0.0000 | |
| 90 | T | L | -0.5811 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.2878 | |
| 93 | S | L | -1.1893 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -1.0418 | |
| 96 | P | L | -1.0671 | |
| 97 | E | L | -1.6129 | |
| 98 | D | L | 0.0000 | |
| 99 | I | L | -0.4320 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.9135 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | G | L | -0.3505 | |
| 108 | N | L | -0.8786 | |
| 109 | T | L | -0.2199 | |
| 114 | F | L | -0.0201 | |
| 115 | P | L | -0.2866 | |
| 116 | Y | L | 0.0000 | |
| 117 | T | L | -0.7758 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.6402 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.7287 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -1.6428 | |
| 126 | I | L | -0.9331 | |
| 127 | K | L | -1.5854 |