Project name: TYR_386

Status: done

Started: 2025-10-07 06:21:46
Settings
Chain sequence(s) A: LCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFEL
H: VKLVESGGGLVKPGGSLKLSCAASGFTFSSYAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAENTLYLQMSSLRSEDTAMYYCVRDGNSMDYWGQGTSV
L: DIQMTQTTSSLSASLGDRVTIICRASQDINNYLNWYQQKPDGTVKLLIYYTSRLSGVPSRFSGSGSGSDYSLTISNLEQEDIATYFCQQAYTLPPTFGAGTKLEL
input PDB
Selected Chain(s) A,H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:39)
Show buried residues

Minimal score value
-3.2608
Maximal score value
1.3375
Average score
-0.5989
Total score value
-238.9478

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.0016
2 C A 0.3440
3 P A -0.3863
4 F A 0.0000
5 G A 0.0000
6 E A -1.6592
7 V A -1.3908
8 F A 0.0000
9 N A -1.7471
10 A A -1.5815
11 T A -1.4318
12 R A -1.3042
13 F A -0.3408
14 A A 0.0000
15 S A 0.0000
16 V A 0.0000
17 Y A 0.0000
18 A A 0.0000
19 W A 0.0000
20 N A 0.0000
21 R A -1.5211
22 K A -1.5612
23 R A -1.8568
24 I A -0.9037
25 S A -1.1008
26 N A -0.8955
27 C A 0.0000
28 V A 0.0907
29 A A 0.0000
30 D A -0.7748
31 Y A 0.0000
32 S A -0.0160
33 V A -0.1141
34 L A 0.0000
35 Y A 0.7183
36 N A -0.7129
37 S A -0.4218
38 A A -0.1064
39 S A -0.0339
40 F A 0.4671
41 S A 0.0018
42 T A -0.2295
43 F A 0.2258
44 K A -0.7107
45 C A -0.2879
46 Y A -0.4172
47 G A -0.5199
48 V A -0.3514
49 S A -0.9852
50 P A -1.3004
51 T A -1.5391
52 K A -2.4129
53 L A 0.0000
54 N A -1.9258
55 D A -2.3518
56 L A -0.5169
57 C A 0.2006
58 F A 0.0000
59 T A -0.4026
60 N A -0.8858
61 V A 0.0000
62 Y A -0.9522
63 A A 0.0000
64 D A 0.0000
65 S A 0.0000
66 F A 0.0000
67 V A 0.0000
68 I A 0.0000
69 R A -0.9730
70 G A 0.0000
71 D A -2.1038
72 E A -2.1469
73 V A 0.0000
74 R A -2.6108
75 Q A -2.0441
76 I A 0.0000
77 A A -1.1817
78 P A -1.7260
79 G A -1.5024
80 Q A -1.6774
81 T A -1.0742
82 G A -1.0895
83 K A -1.3757
84 I A 0.0000
85 A A 0.0000
86 D A -1.5671
87 Y A -1.3889
88 N A 0.0000
89 Y A 0.0000
90 K A -1.5057
91 L A 0.0000
92 P A -1.8992
93 D A -2.9385
94 D A -2.7859
95 F A 0.0000
96 T A -0.9252
97 G A 0.0000
98 C A 0.0000
99 V A 0.0000
100 I A 0.0000
101 A A 0.0000
102 W A -0.0628
103 N A -0.4693
104 S A 0.0000
105 N A -0.6260
106 N A -1.2258
107 L A -0.0806
108 D A 0.0000
109 S A 0.0000
110 K A -0.7491
111 V A 0.6757
112 G A -0.3392
113 G A -0.4827
114 N A -0.6854
115 Y A -0.4204
116 N A -0.5338
117 Y A 0.1133
118 L A 0.1518
119 Y A 0.0000
120 R A 0.0000
121 L A 0.1098
122 F A -0.3508
123 R A -1.5160
124 K A -2.1339
125 S A -1.8505
126 N A -2.3822
127 L A 0.0000
128 K A -2.5167
129 P A -1.7099
130 F A -0.8845
131 E A -1.8520
132 R A -1.3026
133 D A -1.0388
134 I A 0.0000
135 S A -0.5182
136 T A 0.0000
137 E A -1.3899
138 I A -0.5301
139 Y A -0.6518
140 Q A -1.1184
141 A A -0.5209
142 G A -0.6633
143 S A -0.4635
144 T A -0.3108
145 P A -0.3479
146 C A -0.4134
147 N A -1.4137
148 G A -1.1938
149 V A -0.1819
150 E A -0.1572
151 G A 0.3477
152 F A 1.3375
153 N A 0.0939
154 C A 0.0000
155 Y A 0.7041
156 F A 0.2631
157 P A 0.0000
158 L A 0.0000
159 Q A -0.3236
160 S A 0.0000
161 Y A 0.0000
162 G A -0.3170
163 F A 0.0000
164 Q A -0.5369
165 P A -0.3284
166 T A -0.0698
167 N A -0.2031
168 G A 0.3173
169 V A 1.1036
170 G A -0.0324
171 Y A 0.3004
172 Q A -0.0052
173 P A 0.0000
174 Y A -0.2689
175 R A -0.3267
176 V A 0.0000
177 V A 0.0000
178 V A 0.0000
179 L A 0.0000
180 S A -0.5073
181 F A 0.0000
182 E A -1.0278
183 L A 0.6522
184 V H 1.1791
185 K H -0.0778
186 L H 0.0000
187 V H 0.1740
188 E H 0.0000
189 S H -0.7078
190 G H -1.0867
191 G H -0.4591
192 G H 0.3108
193 L H 1.1622
194 V H -0.1846
195 K H -1.7451
196 P H -1.7538
197 G H -1.5453
198 G H -0.9790
199 S H -1.1433
200 L H -0.7723
201 K H -1.9742
202 L H 0.0000
203 S H -0.4841
204 C H 0.0000
205 A H -0.3520
206 A H 0.0000
207 S H -0.0813
208 G H 0.1761
209 F H 0.2923
210 T H -0.2671
211 F H 0.0000
212 S H -0.7510
213 S H 0.0000
214 Y H -0.1367
215 A H -0.2002
216 M H 0.0000
217 S H 0.0000
218 W H 0.0000
219 V H 0.0000
220 R H 0.0000
221 Q H 0.0000
222 T H -1.7561
223 P H -1.9277
224 E H -2.9366
225 K H -2.9856
226 R H -2.2024
227 L H 0.0000
228 E H -1.1157
229 W H 0.0000
230 V H 0.0000
231 A H 0.0000
232 T H 0.0000
233 I H 0.0000
234 S H 0.0000
235 S H 0.0000
236 G H -0.7837
237 G H -0.5911
238 T H -0.1246
239 Y H 0.1622
240 T H 0.1143
241 Y H 0.0000
242 Y H -0.5850
243 P H -1.2267
244 D H -2.0831
245 S H -1.2413
246 V H 0.0000
247 K H -1.2269
248 G H -1.1719
249 R H -0.9249
250 F H 0.0000
251 T H -0.6577
252 I H 0.0000
253 S H -0.3825
254 R H -1.2491
255 D H -2.1021
256 N H -2.0846
257 A H -1.7041
258 E H -2.6657
259 N H -2.2964
260 T H -1.2997
261 L H 0.0000
262 Y H -0.4689
263 L H 0.0000
264 Q H -1.2727
265 M H 0.0000
266 S H -1.0943
267 S H -1.2136
268 L H 0.0000
269 R H -3.0171
270 S H -1.9873
271 E H -2.5702
272 D H 0.0000
273 T H -0.8315
274 A H 0.0000
275 M H 0.0346
276 Y H 0.0000
277 Y H 0.0000
278 C H 0.0000
279 V H 0.0000
280 R H -0.5524
281 D H -0.6972
282 G H -0.6938
283 N H -1.0050
284 S H -0.8437
285 M H -0.7067
286 D H -1.2474
287 Y H -0.3286
288 W H 0.0000
289 G H 0.0000
290 Q H -1.2560
291 G H -0.3687
292 T H -0.3016
293 S H 0.0784
294 V H 0.5403
295 D L -2.2095
296 I L 0.0000
297 Q L -2.1022
298 M L 0.0000
299 T L -1.0522
300 Q L 0.0000
301 T L -0.1724
302 T L -0.0831
303 S L -0.4625
304 S L -0.8817
305 L L -0.4393
306 S L -0.3950
307 A L -0.8621
308 S L -0.9875
309 L L -1.0903
310 G L -2.1372
311 D L -3.2608
312 R L -3.1614
313 V L 0.0000
314 T L -0.1938
315 I L 0.0000
316 I L 0.3793
317 C L 0.0000
318 R L -2.7208
319 A L -2.1163
320 S L -1.8105
321 Q L -1.7877
322 D L -1.3376
323 I L 0.0000
324 N L -0.7039
325 N L -0.6339
326 Y L 0.0000
327 L L 0.0000
328 N L 0.0000
329 W L 0.0000
330 Y L 0.0000
331 Q L 0.0000
332 Q L 0.0000
333 K L -1.5663
334 P L -1.4070
335 D L -2.2707
336 G L -1.4737
337 T L -1.1895
338 V L 0.0000
339 K L -0.6771
340 L L -0.2638
341 L L 0.0000
342 I L 0.0000
343 Y L -0.0341
344 Y L 0.0557
345 T L 0.0000
346 S L -0.7729
347 R L -1.3615
348 L L -0.2028
350 S L -0.6372
351 G L -0.4110
352 V L -0.3022
353 P L -0.2907
354 S L -0.3531
355 R L -1.0722
356 F L 0.0000
357 S L -0.5397
358 G L 0.0000
359 S L -0.7173
360 G L -1.1841
361 S L -1.1838
362 G L -1.4848
363 S L -2.0440
364 D L -2.7648
365 Y L 0.0000
366 S L -0.3947
367 L L 0.0000
368 T L -0.5181
369 I L 0.0000
370 S L -2.1424
371 N L -2.9763
372 L L 0.0000
373 E L -2.6891
374 Q L -2.3985
375 E L -2.6616
376 D L 0.0000
377 I L -1.3312
378 A L 0.0000
379 T L 0.0000
380 Y L 0.0000
381 F L 0.0000
382 C L 0.0000
383 Q L 0.0000
384 Q L 0.0000
385 A L 0.1266
386 Y L 0.0509
387 T L -0.1426
388 L L -0.1662
389 P L -0.7285
390 P L -0.4082
391 T L -0.8396
392 F L 0.0000
393 G L 0.0000
394 A L -1.2904
395 G L 0.0000
396 T L 0.0000
397 K L -1.2437
398 L L 0.0000
399 E L -1.2531
400 L L 0.6695
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Laboratory of Theory of Biopolymers 2018